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Phusion polymerase master mix

Manufactured by Thermo Fisher Scientific

Phusion polymerase master mix is a ready-to-use solution for PCR amplification. It contains Phusion high-fidelity DNA polymerase, dNTPs, and buffer components optimized for efficient and accurate DNA synthesis.

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2 protocols using phusion polymerase master mix

1

First-strand cDNA synthesis and sequencing

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First-strand cDNAs were synthesized from 1 μg of total RNA using the SuperScript IV cDNA synthesis kit (Thermo Scientific). The cDNA products were diluted to 50 μL. PCR amplification (50 μL) was performed using 2.5 μL of cDNA as template with attB-flanked gene-specific primers (Additional file 7: Table S5) in a Veriti Thermo Cycler (Thermo Fisher Scientific) using Phusion polymerase master mix (Thermo Fisher Scientific). Cycling parameters were as follows: an initial denaturing step at 94 °C for 5 min, 35 cycles at 96 °C for 15 s, 55 °C for 30 s, 72 °C for 1 min followed by a final extension step at 72 °C for 10 min. Specific PCR products were cloned into the pDONR221 vector (Thermo Fisher Scientific) in the presence of BP clonase (Invitrogen). Plasmid DNAs were isolated according to standard protocols and recombinant plasmids were subjected to sequencing using universal M13 primers and the BigDye terminator cycle sequencing kit v1.1 (Thermo Fisher Scientific). Sequencing products were EDTA/ethanol-precipitated, dissolved in formamide, and loaded for analysis on an in-house capillary 3130xl Genetic analyzer (Applied Biosystems).
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2

Cloning and Sequencing of cDNA Targets

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First-strand cDNAs were synthesized from one microgram of total RNA using the SuperScript IV cDNA synthesis kit (Thermo Scientific). The cDNA products were diluted to 50 µL. PCR amplification (50 µL) was performed using 2.5 µL of cDNA as template with attB-flanked gene-specific primers (Supplementary Table S5) in a Veriti Thermo Cycler (Thermo Fisher Scientific) using Phusion polymerase master mix (Thermo Fisher Scientific). Cycling parameters were as follows: an initial denaturing step at 94ºC for 5 min, 35 cycles at 96ºC for 15 s, 55ºC for 30 s, 72ºC for 1 min followed by a final extension step at 72ºC for 10 min. Specific PCR products were cloned into the pDONR221 vector (Thermo Fisher Scientific) in presence of BP clonase (Invitrogen). Plasmid DNAs were isolated according to standard protocols and recombinant plasmids were subjected to sequencing using universal M13 primers and the BigDye terminator cycle sequencing kit v1.1 (Thermo Fisher Scientific). Sequencing products were EDTA/ethanol-precipitated, dissolved in formamide and loaded for analysis on an in-house capillary 3130xl Genetic analyzer (Applied Biosystems).
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