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11 protocols using anti mouse igg h l alexa fluor 488

1

Evaluating Cell Proliferation After Material Implantation

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To assess proliferation activity in the area of material implantation, immunohistochemical examination was performed using the Ki-67 proliferation marker. Examination protocol included incubation of sections with primary antibodies — monoclonal mouse antibodies to Ki-67 (clone MIB-1; Dako, Denmark) and secondary antibodies Goat anti-Mouse IgG H+L, Alexa Fluor 488 (Abcam, USA). To improve visualization, cell nuclei were stained with Hoechst 3334 dye (BD Pharmingen, USA). After obtaining the preparations, the proportion of Ki-67+ cells was counted.
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2

Lipid Accumulation and Smooth Muscle Profiling

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Cells were fixed in Propylene Glycol and stained with Oil red O (Abcam, ab150678) according to the manufacturer's instructions. For immunostaining, hcSMCs were fixed in 4% paraformaldehyde in PBS and incubated with primary antibodies against human CD68 (Abcam ab955; dilution, 1:100) and α-Smooth Muscle actin (Abcam ab32575; dilution, 1:500) at 4 °C overnight. After washing in PBS, cells were incubated for 1 h at room temperature with Anti-Rabbit IgG H&L (Alexa Fluor® 555) (Abcam ab150086) and Anti-Mouse IgG H&L (Alexa Fluor® 488) (Abcam ab150117) followed by incubation with Slowfade Diamond Antifade Mountant with DAPI (Thermo Fisher Scientific S36964).
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3

Immunofluorescence Staining of Glioma Cells

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Following fixation with 4% paraformaldehyde in PBS for 10 min, the cells were washed twice with PBS. The GC cells were incubated with the primary antibodies anti-NEK9 (cat. no. sc-100401, Santa Cruz Biotechnology, Inc. for IP and IF), anti-CTTN (cat. no. sc-55579, Santa Cruz Biotechnology, Inc.), anti-SLIT2 (cat. no. 20217-1-AP, ProteinTech Group, Inc.), anti-α-SMA (cat. no. GB111364, Servicebio) and anti-α-tubulin (cat. no. ab7291, Abcam) overnight at 4 °C and the secondary antibody anti-mouse IgG H&L (Alexa Fluor 488) (ab150113, Abcam) 1 h at room temperature. Finally, the cells were washed and mounted with mounting medium containing DAPI (Vector Laboratories, Inc.). For phalloidin staining, the GC cells were incubated with phalloidin for 40 min at room temperature. Images were captured using a Nikon A1 Plus confocal microscope (Nikon Corporation).
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4

Peroxisome Protein Localization Assay

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We used the following antibodies: anti-GAPDH (sc-47724, Santa Cruz Biotechnology), anti-PMP70 (SAB4200181, Sigma), anti-PEX19 (14713-1-AP, Proteintech), anti-PEX5 (HPA039260, Sigma), anti-VAPB (14477-1-AP, ProteinTech), anti-PEX10 (STJ119242, St John’s Laboratory), antiVAPA (sc-293278, SantaCruz Biotech) anti-PEX14 (10594-1-AP, Proteintech). Primary antibodies were used at 1:250 dilution.
Secondary antibodies for immunofluorescence: anti-rabbit IgG Cy3-conjugated (Sigma-Aldrich C2306), anti-Mouse IgG Cy3-conjugated (Sigma-Aldrich C2181), anti-rabbit IgG Cy5 conjugated (Invitrogen A10523), Anti-Mouse IgG H&L (Alexa Fluor® 488) (Abcam). Secondary antibodies were used at 1:1000 dilution.
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5

Quantifying Cellular Signaling Pathways in PCa Cells

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This assay was performed as we described [28 (link), 29 (link)]. Briefly, PCa cells post Spautin-1 treatment were fixed with 4% paraformaldehyde for 15 min. 0.5% Triton-X was used to permeabilize cells for 5 min. 5% BSA (bovine serum albumin, Sigma) was used to block for 30 min. And then the cells were incubated with Phospho-JNK, Phospho-ERK or Glut1 primary antibodies overnight at 4 °C. Next the cells were incubated with anti-mouse IgG H&L (Alexa Fluor 488, Abcam) or anti-rabbit IgG-cy3 (Bioworld) secondary antibodies for 1 h. DAPI (4′,6-diamidino-2-phenylindole, Abcam) was used to indicate the nucleus. Images were acquired using an Olympus fluorescence microscope with 400× magnification.
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6

Flow Cytometry Analysis of Neural Markers

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The general flow cytometry analysis protocols were performed as follows: The cells were centrifuged for 5 min at 400 x g and 10˚C. Single cell suspensions were obtained in a solution consisting of PBS supplemented with 2% FBS, and then re-suspended in 200 µl 4% paraformaldehyde and fixed at room temperature for 10 min. The cells were permeabilized using 100 µl PBS with 0.1% Triton X-100 (cat. no. ST797; Beyotime Institute of Biotechnology) for 20 min at 4˚C. The primary antibodies were added and cells were incubated at 4˚C for 30 min, and then subsequently, cells were treated with the corresponding secondary antibody at 4˚C for 30 min. Next, flow cytometry was performed using a BD Fortessa (Becton-Dickinson and Company). Analysis of the flow data was performed using FlowJo version 10 (FlowJo, LLC). The primary antibodies used were mouse anti-Nestin polyclonal antibody (1:200; Abcam; cat. no. ab1642) and mouse anti-GFAP polyclonal antibody (1:200; Abcam; cat. no. ab10062). The secondary antibody used was an anti-mouse IgG H&L-AlexaFluor 488 (1:1,000; Abcam; cat. no. ab150105).
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7

Cryosection Immunostaining in Zebrafish

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The cryosection immunostaining was performed as previously described54 (link). The primary antibodies were anti-GFAP (DAKO, Z0334), anti-GFP (Abcam, ab13970), anti-PCNA (Sigma, P8825), anti-PSA-NCAM (Chemico, MAB5324), and anti-H2A.XS139ph (Genetex, GTX127340). The zebrafish p53 polyclonal antibody was generated by HuaAn Biotechnology (Hangzhou, China) as previously described. The secondary antibodies were anti-Rabbit IgG H&L Dylight 549 (EarthOx, E032320), anti-Rabbit IgG H&L Alexa Fluor 647 (Abcam, ab150143), anti-Chicken IgY H&L Alexa Fluor 488 (Abcam, ab150169), anti-mouse IgG H&L Alexa Fluor 488 (Abcam, ab150113), and anti-mouse IgG H&L Alexa Fluor 647 (Abcam, ab150115). Nuclei were stained by DAPI (BYT, C1002).
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8

Immunostaining of Brain Sections from GPx-1 KO Mice

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Five μm thickness of brain sections from GPx-1 KO mice were positioned on the same slide and processed for immunostaining. Adhered tissues on poly-L-lysine-precoated coverslips, were fixed in PBS-4% para-formaldehyde (PFA), and were permeabilized with 0.1% Triton X-100 in PBS for 15 min. After saturation with PBS-1% BSA, tissues were incubated for 40 min with the primary antibody and were incubated for 40 min with the secondary antibody as follows: mouse anti-Nrf2 (1:100) (Santa Cruz, TX, USA), goat anti-ChAT (1:100) (Sigma-Aldrich, St. Louis, MO, USA). Secondary antibodies were anti-mouse IgG H&L (Alexa Fluor® 488) (1:200) (Abcam, Cambridge, MA, USA), anti-goat IgG H&L (Alexa Fluor® 546) (1:200) (Invitrogen, Carlsbad, CA, USA) [33 (link)]. Please refer to Supplementary Materials and Methods 1.12.
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9

Cryosection Immunostaining Protocol for Tissue Analysis

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The cryosection was performed as previously described [35 (link)]. For immunostaining, the primary antibodies were anti-MF20 (DSHB, AB 2147781, 1:50), anti-Glut1 (ABclonal, A6982, 1:200), anti-cmyc (ABclonal, A1309, 1:200), anti-GFP (Abcam, ab13970). The second antibodiess were anti-mouse IgG H&L Alexa Fluor 488 (Abcam, ab150113), anti-Chicken IgY H&L Alexa Fluor 488 (Abcam, ab150169), Dylight 549-conjugated anti-rabbit IgG H&L (EarthOx, E032320), anti-Rabbit IgG H&L Alexa Fluor 647 (Abcam, ab150143), anti-mouse IgG H&L Alexa Fluor 647 (Abcam, ab150115). Nuclei were stained by DAPI (BYT, C1002).
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10

Immunofluorescence Analysis of AR-V7 in 22Rv1 Cells

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Immunofluorescence analysis was performed as previously described 16 (link), 17 (link). Briefly, 22Rv1 cells were transfected with HA-AR-V7 for 48 h. Cells were washed with cold PBS and then fixed with 4% paraformaldehyde for 15 min. Fixed cells were washed again and then permeabilized with 0.5% Triton-X for 5 min. After permeabilization, the cells were blocked with 5% bovine serum albumin (Sigma) for 30 min, and then antibodies as indicated in the figures were added and incubated overnight at 4°C. Anti-mouse IgG H&L (Alexa Fluor 488, Abcam) and anti-rabbit IgG H&L (Alexa Fluor 647, Abcam) secondary antibodies were used to generate green and red fluorescence. DAPI (0.1 μg/ml, Abcam) staining was used to visualize nuclei. A confocal microscope (Leica TCS SP8) was employed to image the cells.
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