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5 protocols using diisopropylcarbodiimide dic

1

Peptide Synthesis via Fmoc SPPS

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Synthesis of peptide precursors was performed manually using fritted syringes on a vacuum manifold via 9‐fluorenylmethyloxycarbonyl (Fmoc) solid‐phase peptide synthesis (SPPS). All reagents were purchased from commercial sources and used without further purification. 2‐Chlorotrityl chloride resin (sub. = 1.2 mmol/g), Wang resin (sub. = 0.73 mmol/g), Oxyma Pure and all standard Fmoc amino acids were sourced from Mimotopes Pty Ltd (Australia). Fmoc‐L‐Dap(Boc)‐OH and Fmoc‐L‐Asp‐OMe were obtained from AK Scientific, Inc. (USA). Fmoc‐Cys(StBu)‐OH was sourced from CreoSalus, Inc. (USA). (1‐Cyano‐2‐ethoxy‐2‐oxoethylidenaminooxy)dimethylamino‐morpholino‐carbenium hexafluorophosphate (COMU), 1‐[bis (dimethylamino)methylene]‐1H‐1,2,3‐triazolo[4,5‐b]pyridinium‐3‐oxide hexafluorophosphate (HATU) and 2,2′‐dipyridyldisulfide (DPDS) were purchased from Combi Blocks (USA). Diisopropylcarbodiimide (DIC), 4‐dimethylaminopyridine (DMAP), diphenyldiselenide, acetoacetone, triisopropylsilane (TIPS), thioanisole, 2,2′‐(ethylenedioxy)diethanethiol (DODT), trifluoroacetic acid (TFA), piperidine, diisopropylethylamine (DIEA), N‐methylmorpholine (NMM), hydrazine hydrate, tris‐carboxyethylphosphine hydrochloride (TCEP.HCl), iodine, dimethylformamide (DMF), dichloromethane (DCM), diethyl ether, acetonitrile and trypsin were purchased from Sigma‐Merck (Australia).
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2

Synthesis and Characterization of Soluble Peptides

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The soluble peptides EEFRDYYENGEEKSNKQM (PI), SSGVRVDLGEDAEVENAK (PII), GDQRLKDGGFAFPNADDH (PIII) and KLKDGGFAFPNANDHEEFRDYYENGEEKSNKQM (tripeptide) were synthesized on a 25 μmol scale in the ResPep SL automated synthesizer (Intavis®). Brielfy, Fmoc-amino acids were activated with a 1∶1 solution of Oxyma Pure (Merk) and diisopropylcarbodiimide (DIC, Sigma-Aldrich). The active amino acids were incorporated into TentaGel (Intavis) (Peptides I and II) or H-Rink Amide ChemMatrix (Sigma-Aldrich) (Peptide III and Tripeptide) resins. Fmoc deprotection was performed using 25% 4-methylpiperidine (25% v/v in DMF). These steps were repeated until the synthesis of each peptide was completed. The peptides were deprotected and released form the resin by treatment with a solution of 92.5% trifluoroacetic acid, 2.5% water, 2.5% triisopropylsilane and 2.5% beta-mercaptoethanol during 3 hours under agitation. Specifically, for the Tripeptide the synthesis was performed using a chaotropic agent and lithium chloride (0.8M). The time of deprotection was prolonged in order to guarantee the proper extension of the polypeptide chain. The peptides were precipitated with cold methyl tert-butyl ether and lyophilized. The molecular weight of each peptide synthetized was confirmed by mass spectrometry using Autoflex Speed MALDI/TOF equipment.
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3

Curcumin-Based Antimicrobial and Cytotoxicity Assays

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Curcumin ≥65% pure
(Cur), fmoc-Arg(Pbf)-OH, diisopropylcarbodiimide (DIC), piperidine,
ethylcyano(hydroxyimino)acetate (Oxyma), N,N-dimethylformamide anhydrous (DMF), dichloromethane, trifluoroacetic
acid (TFA), triisopropylsilane (TIS), and dimethyl sulfoxide (DMSO)
were purchased from Sigma-Aldrich. PI P1304MP and LIVE/DEAD Baclight assay kit (L7007) were purchased from Invitrogen
(Carlsbad, CA, USA). Methylthiazolyldiphenyl-tetrazolium bromide (MTT)
reagent (M2128) was obtained from Sigma-Aldrich (St. Louis, MO, USA).
Bacterial cells E. coli (ATCC 25922)
and S. aureus (ATCC 25923) were procured
from Microbial Type Culture Collection and Gene Bank (MTCC), Chandigarh,
India. NIH3T3 mouse fibroblast cells were obtained from National Centre
for Cell Science (NCCS) Pune, India. Dulbecco’s modified Eagle’s
medium, trypsin, was obtained from Invitrogen. Mueller Hinton (MH)
agar and broth were obtained from HiMedia (Mumbai, India).
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4

Solid-Phase Peptide Synthesis Protocol

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Tentagel macrobeads were purchased from Rapp Polymere (Germany). All the Fmoc protected amino acids, 2‐(1H‐benzotriazol‐1‐yl)−1,1,3,3‐tetramethyluronium hexafluorophosphate (HBTU), and HOBt were purchased from EMD millipore (Billerica, MA). All primary amines, bromoacetic acid, diisopropylcarbodiimide (DIC), N,N‐diisopropylethylamine (DIPEA), piperidine, trifluoroacetic acid (TFA), and dimethyl formamide (DMF) were purchased from Sigma‐Aldrich (Milwaukee, WI); Dichloromethane (DCM) and acetonitrile were obtained from Honeywell Burdick & Jackson (Morristown, NJ, USA). H‐β‐Ala‐OtBu.HCl was purchased from EMD Biosciences (Gibbstown, NJ, USA). All of the chemical reagents and solvents from commercial sources were used without further purification. 5 mL disposable reaction columns (Intavis AG) were used as reaction vessels for solid‐phase synthesis.
MALDI‐TOF mass spectra were acquired on an Applied Biosystems Voyager‐6115 and Voyager De‐Pro using α‐Cyano‐4‐hydroxycinnamic acid as matrix, while MS/MS (MALDI‐TOF) for sequencing were performed on a 4700 Proteomics Analyzer (Applied Biosystems).
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5

Solid-Phase Peptide Synthesis Reagents

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Tentagel HL-RAM resin was obtained from Rapp Polymere (Tuebingen, Germany). Fmoc-protected amino acids and O-(1H-6-Cholorobenzotriazol-1-yl)-1,1,3,3-tetramethyluronium hexafluorophosphate (HCTU) were purchased from NovaBiochem (Amsterdam, The Netherlands). Acetic anhydride, acetonitrile, dimethylformamide (DMF), dioxane, methanol, piperidine, pyridine, and trifluoroacetic acid (TFA) were purchased from Biosolve (Valkenswaard, The Netherlands). N,N-Diisopropylethylamine (DIPEA) and Oxyma were purchased from Carl Roth (Karlsruhe, Germany). Cholesterol, cholesteryl hemisuccinate, Diisopropylcarbodiimide (DIC), tert-butanol, sulforhodamine B, sodium hydroxide, triisopropylsilane (TIPS), and trimethylphosphine (1 M in toluene) were obtained from Sigma Aldrich (Zwijndrecht, The Netherlands). Chloroform, dichloromethane (DCM), and diethyl ether were supplied by Honeywell (Meppel, The Netherlands). The compounds 1,2-dioleoyl-sn-glycero-3-phosphocholine (DOPC), 1,2-dioleoyl-sn-glycero-3-phosphoethanolamine (DOPE), 1,2-dioleoyl-sn-glycero-3-phosphoethanolamine-N-(lissamine rhodamine B sulfonyl) (DOPE-LR), and 1,2-dioleoyl-sn-glycero-3-phosphoethanolamine-N-(7-nitro-2,1,3-benzoxadiazol-4-yl) (DOPE-NBD) were all purchased from Avanti Polar Lipids (Alabaster, AL, USA). Ultrapure water was purified using a Milli-Q™ purification system from Millipore (Amsterdam, The Netherlands).
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