Red blood cells were lysed in bone marrow and
collagenase IV (Sigma)-treated lung samples. Lung, spleen or BM cells (3 × 10
6) were then stained with fixable viability dye eFluor501 (eBioscience) at the concentration of 1:1 000 for 30 minutes (4°C). Subsequently, the cells were washed with PBS supplemented with 0.5%
BSA (Wisent) and incubated with
anti-CD16/32 (clone 93, eBioscience) at a concentration of 1:100 in PBS/0.5%
BSA at 4°C for 10. After washing, cells were incubated with fluorochrome tagged antibodies at 4°C for 30 minutes. Antibodies for the innate panel:
anti-CD11b–Pacific Blue (clone M1/70, eBioscience),
anti-CD11c–PE-Cy7 (clone HL3, BD Bioscience),
Siglec-F–PE-CF594 (clone E50–2440, BD Bioscience),
F4/80–APC (clone BM8, eBioscience),
Ly6C–FITC (clone AL-21, BD Bioscience), Ly6G–PerCP-eFluor710 (clone 1A8, eBioscience). Antibodies for the adaptive panel:
anti-CD3–PE (clone 145-2C11, eBioscience),
anti-CD19–PE-Cy7 (clone eBio1D3 (1D3), eBioscience), anti-CD4–eFluor450 or anti-CD4-FITC (clone GK1.5, eBioscience),
anti-CD8–AF700 (clone 53-6.7, BD Bioscience). All cells were subsequently washed with PBS/0.5%
BSA and resuspended in 1% paraformaldehyde.
Khan N., Downey J., Sanz J., Kaufmann E., Blankenhaus B., Pacis A., Pernet E., Ahmed E., Cardoso S., Nijnik A., Mazer B., Sassetti C., Behr M.A., Soares M.P., Barreiro L.B, & Divangahi M. (2020). M. tuberculosis Reprograms Hematopoietic Stem Cells to Limit Myelopoiesis and Impair Trained Immunity. Cell, 183(3), 752-770.e22.