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Dionex ultimate 3000 series hplc system

Manufactured by Thermo Fisher Scientific
Sourced in Germany

The Dionex Ultimate 3000 series HPLC system is a high-performance liquid chromatography (HPLC) platform designed for a wide range of analytical applications. It features advanced hardware and software components to enable precise, reliable, and efficient separation and analysis of chemical compounds.

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2 protocols using dionex ultimate 3000 series hplc system

1

Molecular Cloning and Metabolomic Analysis

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PCR reagents, plasmid purification, restriction enzymes, and T4 DNA ligase were used as recommended by New England Biolabs (NEB) unless otherwise noted. Vectors used in this study included the bacterial expression vectors pCWori (43 (link)) and pET28a (Novagen). E. coli cell strains used in this study included Top10 (Invitrogen), DH5α, and BL21(DE3) (NEB). All reagents were used as received from commercial sources. Loganin (Cayman Chemical) and loganic acid (Arctom Chemicals) were 98+% pure.
LC-MS analyses of the Camptotheca SLAS mutants were conducted using a Shimadzu LC-MS2010EV system at the Institute for Genomic Biology, University of Illinois Urbana-Champaign. High resolution LC-MS analyses of the WT Camptotheca SLASs and the SLS, SLAS common ancestor were performed by Dr Alexander Ulanov in the Metabolomics Laboratory of the Roy. J. Carver Biotechnology Center at the University of Illinois Urbana-Champaign using a Dionex Ultimate 3000 series HPLC system (Thermo Scientific) with Q-Exactive MS system (Thermo Scientific). Spectroscopic measurements were recorded with a Cary UV-Vis Bio100 dual beam spectrophotometer or Molecular Devices SpectraMax M-series plate reader as appropriate.
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2

High-resolution LC/MS analysis protocol

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For high resolution LC/MS, the samples were analyzed by using the Q-Exactive MS system (Thermo. Bremen, Germany) in the Metabolomics Laboratory of Roy J. Carver Biotechnology Center, University of Illinois at Urbana-Champaign. Software Xcalibur 3.0.63 was used for data acquisition and analysis. The Dionex Ultimate 3000 series HPLC system (Thermo, Germering, Germany) used includes a degasser, an autosampler, and a binary pump. The LC separation was performed using the same Phenomenex Prodigy® 5μm ODS-2 column as for HPLC. The autosampler was set to 10°C. The injection volume was 10 μL. Mass spectra were acquired under positive electrospray ionization (sheath gas flow rate, 49; aux gas flow rate: 12; sweep gas flow rate, 2; spray voltage, 3.5 kV; capillary temp, 259 °C; Aux gas heater temp, 419 °C). Mass scan range is 70 - 1,000. For full scan, the resolution was set to 70,000, and the AGC target was 1E6 with a maximum injection time of 50 ms. For MS/MS scan, the resolution was set to 17,500 and the AGC target was 5E4 with a maximum injection time of 50 ms. NCE was 25 and 30.
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