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17 protocols using be 2 m17

1

Establishment of Neuroblastoma Xenograft Model

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Human NB cell lines SK‐N‐AS, SK‐N‐DZ, IMR‐32, SK‐N‐FI, BE(2)‐M17 and SH‐SY5Y were purchased from the ATCC and maintained according to accepted guidelines. SK‐N‐AS, SK‐N‐DZ and SK‐N‐FI cells were cultured in DMEM supplemented with L‐glutamine; IMR‐32 cells were cultured in Eagle's Minimum Essential Medium supplemented with sodium pyruvate; BE(2)‐M17 cells were cultured in a 1:1 mixture of MEM and F‐12 medium supplemented with sodium pyruvate; SH‐SY‐5Y cells were cultured in a 1:1 mixture of DMEM and F‐12 medium. All the above culture mediums contain 10% (v/v) heat‐inactivated FBS, 10 mM nonessential amino acids and antibiotic‐antimycotic. The cells were cultured at 37°C humidified atmosphere containing 5% CO2.
Male nonobese diabetic‐severe combined immunodeficient (NOD‐SCID) mice, 4 weeks of age, were purchased from BioLASCO Taiwan (Ilan, Taiwan); 10 mg/kg of polyinosinic‐polycytidylic acid high molecular weight [poly (I:C)HMW; Invitrogen, San Diego, CA, USA] administration and xenograft sample processing were performed as described previously.15 Tissues from 3 mice in each group were used for immunohistochemical staining on day 17 or day 27 post–injection.
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2

Cell Line Acquisition and Mycoplasma Testing

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CHP-134, KELLY, and SK-N-SH cells were purchased from Sigma (MilliporeSigma, USA). BE(2)-M17, SK-N_FI, RS4-11, H2452, and 293T cells were purchased from ATCC. IMR-5 cell line was a gift from the Cellular Screening Center at the University of Chicago. IMR-5 was cultured in Eagle’s Minimum Essential Medium (EMEM, ATCC catalog# 30-2003) supplemented with fetal bovine serum (FBS, ATCC® 30-2020™) to a final concentration of 10%. The rest of the cell lines were cultured under conditions recommended by the vendors. All cells are cultured at 37 °C with 5% CO2. No cell lines used in this study were found in the database of commonly misidentified cell lines that are maintained by ICLAC and NCBI Biosample. Cell lines were tested negative for mycoplasma using the MycoAlert mycoplasma detection kit (Lonza, LT07-118).
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3

Neuroblastoma Cell Lines Epigenetic Modulation

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Human NB cell lines (SK-N-AS, SK-N-FI, BE(2)-M17 and SKN-DZ) were purchased from the American Type Culture Collection (Manassas, VA, USA). All cell lines were maintained in Dulbecco’s modified Eagle’s medium (DMEM) (12100-046, Thermo Fisher Scientific, Waltham, MA, USA) and supplemented with 10%-heat-inactivated fetal bovine serum (FBS; 10437-028, Thermo Fisher Scientific, Waltham, MA, USA), GlutaMAX (35050-061, Thermo Fisher Scientific, Waltham, MA, USA), non-essential amino acids (11140-050, Thermo Fisher Scientific, Waltham, MA, USA) and an antibiotic–antimycotic (15240-062, Thermo Fisher Scientific, Waltham, MA, USA) in a 5%-CO2 humidified incubator at 37 °C. NB cells treated with 5-aza-2′-deoxycytidine (Dac) (A3656, Sigma-Aldrich, St. Louis, MO, USA) at various doses were harvested after 3 or 5 days. For synergistic treatment with other drugs, NB was first grown in medium containing 2.5-μM Dac for 3 or 5 days. Then, Dac-containing medium was washed out and replaced with fresh medium loaded with 50-μg/mL poly(I:C)(tlrl-pic-5, Invivogen, San Diego, CA, USA), 10-μM cisplatin (Fresenius Kabi India, Pune, India) or a combination of both.
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4

HeLa and BE(2)-M17 Cell Culture

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HeLa and BE(2)-M17 cells were obtained from the American Type Culture Collection (ATCC, Manassas, VA) and were maintained at 37°C and 5% CO2. HeLa cells were cultured in Dulbecco’s modified Eagle medium supplemented with 10% heat-inactivated fetal bovine serum (FBS), 2 mM glutamine and 100 units/ml penicillin/streptomycin. BE(2)-M17 cells were cultured in a medium containing 50% of Eagle’s Minimum Essential Medium (EMEM), 50% of HAM-F12 supplemented with 10% heat-inactivated fetal bovine serum (FBS), 2 mM glutamine and 100 units/ml penicillin/streptomycin. Details on siRNAs and cell transfection can be found in the online Supplementary Materials.
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5

Culturing Human Neuroblastoma Cell Lines

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Human NB cell lines, SK-N-AS (CRL-2137), SK-N-DZ (CRL-2149), and BE(2)-M17 (CRL-2267), were purchased from the American Type Culture Collection (ATCC, Manassas, VA, USA). SK-N-AS and SK-N-DZ cell lines were cultured in Dulbecco's modified Eagle's medium (DMEM) adjusted to contain 2 mM L-glutamine. BE(2)-M17 cells were cultured in Minimum Essential Media (MEM)/F-12 (1:1) medium adjusted to contain 1 mM sodium pyruvate. All culture media were supplemented with 10% (v/v) heatinactivated fetal bovine serum (FBS), 10 mM nonessential amino acids, and antibiotic-antimycotic. Cells were cultured at 37 °C in an incubator with controlled humidified atmosphere containing 5% CO 2 . All cell culture reagents were purchased from Invitrogen (Carlsbad, CA, USA).
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6

Neuroblastoma Cell Line Characterization

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The human neuroblastoma cell lines BE(2)-C, SK-N-BE(2), and BE(2)-M17 were from the American Type Culture Collection (Manassas, VA, USA); KELLY were from the cell line repository at the Greehey Children’s Cancer Research Institute at the University of Texas Health, San Antonio. The miR-506-3p mimic, analogs, and negative control oligos were purchased from Sigma-Aldrich (St. Louis, MO, USA).
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7

Cultivation of Human NB Cell Lines

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Human NB cells (Be(2)-M17, CHLA-20, IMR-32, SK-N-SH, and SH-SY5Y) and human foreskin fibroblasts (HFF-1) were cultivated in Dulbecco's Modified Eagle Medium (DMEM)/Ham's F-12 medium (LGC Biotechnology, São Paulo, Brazil) supplemented with 10% heat inactivated fetal bovine serum (FBS), 100 IU/mL penicillin, and 0.1 mg/mL streptomycin (all from Gibco, Thermo Fisher Scientific, Waltham, MA, USA). Cells were maintained at 37 °C in 5% CO 2 . CHLA-20 and IMR-32 NB cells were kindly gifted by St. Jude Children's Hospital (Memphis, TN, USA), SK-N-SH, Be(2)-M17, and SH-SY5Y were obtained from the American Type Culture Collection (ATCC, Manassas, VA, USA). HFF-1 was obtained from the Rio de Janeiro Cell Bank, RJ, Brazil.
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8

Cell Culture Protocols for Melanoma and Neuroblastoma

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Human melanoma cell lines (SK-MEL-3, A375, C32, and Malme-3M cells) and human neuroblastoma cell lines (SK-N-SH, SK-N-AS, SK-N-MC, SH-SY-5Y, BE2-M17, and IMR-32 cells) were purchased from the American Type Culture Collection (ATCC). Dulbecco’s Modified Eagle Medium (DMEM; Gibco, USA) supplemented with 1 % penicillin/streptomycin and 10 % fetal bovine serum (FBS; Invitrogen, Carlsbad, CA, USA) was used to culture cells at 37°C with 5% CO2.
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9

Cell Line Cultivation and Experimental Setup

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Histiocytic lymphoma U937, chronic myelogenous leukemia K562, T-cell leukemia Jurkat, Burkitt lymphoma Raji, prostate cancer PC-3 and DU145, lung adenocarcinoma A549 cell lines were purchased from DSMZ (Braunschweig, Germany). Neuroblastoma SH-SY5Y, SK-N-AS and BE(2)-M17 and breast cancer MCF-7 and MDA-MB-231 cell lines were obtained from the American Type Culture Collection (ATCC, Manassas, VA, USA). Cells were cultured in RPMI 1640 or DMEM medium (Lonza, Verviers, Belgium) supplemented with 10% (v/v) fetal calf serum (FCS; Lonza, Verviers, Belgium) and 1% (v/v) antibiotic-antimycotic (BioWhittaker, Verviers, Belgium) at 37 °C and 5% of CO2. Experiments were performed in culture medium containing 10% of FCS with cells in exponential growth phase. Cells were routinely controlled to exclude mycoplasma contamination. Non-adherent cells were seeded in fresh complete medium at concentrations of 300 000 cells/ml. After 1 h of recovery in the incubator, they were treated at the indicated concentrations. Adherent cells were seeded 36 h before treatment at concentrations of 5000 cells/ well in 96-well plates for viability and proteasome activity assays or 300 000 cells/well in 6-well plates for all the other assays.
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10

Culturing Six Human Neuroblastoma Cell Lines

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Six human NB cell lines (SK-N-AS, SK-N-FI, SK-N-DZ, IMR-32, BE(2)-M17 and SH-SY5Y) were purchased from the American Type Culture Collection (Manassas, VA, USA). Cell culture reagents were purchased from Invitrogen (Carlsbad, CA, USA). SK-N-AS, SK-N-FI and SK-N-DZ were cultured with Dulbecco's modified Eagle's medium (DMEM) containing L-glutamine; IMR-32 was cultured with Eagle's Minimum Essential Medium (MEM) containing sodium pyruvate; BE(2)-M17 was cultured with a 1:1 mixture of MEM and F-12 medium containing sodium pyruvate; SH-SY-5Y was cultured with a 1:1 mixture of DMEM and F-12 medium. All of the above culture mediums contain 10% (v/v) heat-inactivated fetal bovine serum (FBS), 10 mM nonessential amino acids and antibiotic-antimycotic. Cells were cultured in 5% CO2 humidified incubator at 37°C.
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