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5 protocols using α caspase 8

1

RIPK1 Kinase Inhibitor Mechanism Study

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The GSK’963 RIPK1 kinase inhibitor was provided by GSK. The following antibodies were used: α-RIPK1 (BD Biosciences, 610459), α-HOIL (gift from Henning Walczak), α-cIAP1 (Enzo, ALX-803-335-C100), α-TNFR1 (Abcam, 19139), α-Actin (Santa Cruz Biotechnology, sc-1615), α-P-p65 (Cell Signaling, 3033), α-p65 (Cell Signaling, 8242), α-IkBα (Santa Cruz, sc-371), α-P-p38 (Cell Signaling, 9215), α-p38 (Cell Signaling, 9212), α-P-JNK (Cell Signaling, 9255), α-JNK (Santa Cruz Biotechnology, sc-571), α-P-ERK (Cell Signaling, 9101), α-ERK (gift from Chris Marshall) α-caspase-8 (Cell Signaling, 9429), α-FLAG [M2] (SIGMA, M8823), α-Ub (Dako, Z0458), α-FLIP (Adipogene, AG-20B-0056), α-FADD (Santa Cruz Biotechnology, sc-6036), α-RIPK3 (ProSci, 2283), α-Tubulin (SIGMA, T9026), α-SHARPIN (Proteintech, 14626-1-AP), α-TRAF2 (Cell Signaling, 4712), α-CD8-PE-Cy7, GR-1-PE-Cy7, CD11c-FITC, CD4-FITC, CD11b-Cy5, B220-FITC (gift from Henning Walczak), α-CD69-PE (eBioscience, 12-0691-82), α-CD3-APC (eBioscience, 47-0032-82), and α-CD16 (eBioscience, 14-0161-82).
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2

Western Blot Analysis of Inflammasome Proteins

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THP-1 and HEK293T cells were lysed with RIPA buffer supplemented with cOmplete protease inhibitors (11697498001; Roche Biochemicals, Mannheim, Germany). Whole-cell lysates were incubated on ice for 30 minutes and clarified by means of centrifugation. Whole-cell lysates were eluted with SDS-PAGE sample buffer, resolved on Novex 4-12% SDS-PAGE gels with MES running buffer, and subsequently transferred onto nitrocellulose membranes. Membranes were blocked overnight in 3% BSA plus 0.1% Tris-buffered saline–Tween 20 at room temperature for 1 hour and then probed overnight at 4°C with primary antibodies, including α-NLRC4 (rabbit α-NLRC4; D5Y8E; Cell Signaling Technology, Danvers, Mass), α–caspase-1 (mouse α–caspase-1 p20; AdipoGen, San Diego, Calif), α-ASC (rabbit α-ASC; sc-22514; Santa Cruz Biotechnology, Dallas, Tex), α–caspase-8 (mouse α–caspase-8; #9746; Cell Signaling Technology), and α-actin (goat α-actin; sc-1616; Santa Cruz Biotechnology).
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3

Western Blot Analysis of Apoptotic Proteins

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Cells lysates were prepared using a radioimmunoprecipitation (RIPA) buffer containing 50 mM Tris-HCl (pH 7.4), 0.1% SDS, 1% Triton-X-100, 0.1% Nonidet P-40, and 0.5% sodium deoxycholate. The buffer was freshly supplemented with 1 mM DTT and protease inhibitor cocktail (Pierce Biotechnology, Rockford, IL, USA). The BCA protein assay (Pierce Biotechnology) was used to measure the protein concentration, and 30 µg of protein was loaded per well onto an SDS-polyacrylamide gel (8 or 10%). The proteins were then transferred to a PVDF membrane (Roche, Penzberg, Germany), and the membrane was blocked with 5% nonfat-dried milk in TBST (10 mM Tris HCl [pH 7.6], 150 mM NaCl, and 0.1% Tween 20) for 1 h at RT. After overnight incubation with primary antibodies (1:2000 dilution in TBST-1% nonfat-dried milk), the membrane was washed and incubated for 1 h with HRP-conjugated anti-rabbit or anti-mouse secondary antibody at RT (1:10,000 dilution in TBST-1% nonfat-dried milk, Pierce Biotechnology). The primary antibodies used were αDNER (Santa Cruz Biotech, Dallas, TX, USA), αNOTCH (Santa Cruz Biotech), αCaspase3, αCaspase8, αCaspase9, αTP53, αp21, and αGAPDH (all from Cell Signaling Tech, Danvers, MA, USA).
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4

Protein Expression and Phosphorylation Analysis

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Protein expression and phosphorylation status was detected by Western blot analysis. The antibodies α-S6K T389, α-4EBP1 T37/46, α-Bax, α-caspase-8, α-Bcl-2, α-Bcl-xL, α-CDK1 T161, α-CDK1 Y15, α-MEK1/2 S217/221 were purchased from Cell Signaling Technology, Inc. (Danvers, MA, USA). The antibodies α-GAPDH, α-Mcl-1, α-Bak were obtained from Santa Cruz Biotechnology, Inc. (Heidelberg, Germany). α-caspase-9 and α-caspase-3 were purchased from R&D Systems, Inc. (Minneapolis, MN, USA). The antibodies α-p53, α-Cyclin B1, and α-Cyclin A were obtained from BD Pharmingen (Heidelberg, Germany). The antibodies α-pHH3 and α-γH2AX were purchased from Sigma-Aldrich (Taufkirchen, Germany). Treated cells were lysed in RIPA buffer67 (link), proteins were isolated by centrifugation and protein concentration was measured using the BCA method. SDS-PAGE was performed as described previously68 (link). Transfer of proteins onto nitrocellulose membrane was performed with Towbin buffer and wet blot using the Trans-Blot® System from Bio-Rad Laboratories (Hercules, CA, USA). For immunodetection, membranes were incubated with primary antibody at 4 °C overnight. Radish peroxidase labeled secondary antibody was added for 2 h at room temperature and chemiluminescence signal was detected by the use of the ChemiDoc™ MP System (Bio-Rad Laboratories, Hercules, CA, USA).
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5

Immunoblotting Protein Expression Analysis

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Tissue and whole cell lysates were prepared in Protein Extraction Reagent (Thermo Fisher) supplemented with Halt Protease and Phosphatase Inhibitor Cocktail (Thermo Fisher). Immunoblotting was performed with lysates run on 4–12% Bis-Tris NuPage gels (Life Technologies) and transferred onto Immobilon-P Transfer Membranes (Millipore) followed by antibody incubation. Immunoreactive bands were visualized by chemiluminescence. The following antibodies were used for immunoblotting: α-HSP90 (Cell Signaling #4877), α-UBE2I (Cell Signaling #4786), α-ADIPOQ (Genetex #GTX112777), α-PPARγ (Cell Signaling #2443), α-Caspase-8 (Cell Signaling #4790), and α-Cleaved Caspase-8 (Cell Signaling #8592).
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