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7 protocols using df6278

1

Protein Expression Analysis in Oxidative Stress

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Liver tissues or harvested cells, as indicated, were lysed with RIPA buffer complemented with protease inhibitors. The protein concentration was evaluated through the BCA protein assay kit. In brief, a total of 30 μg proteins were separated by 10% SDS-polyacrylamide gel electrophoresis and subsequently transferred to nitrocellulose membranes. Primary antibodies used were anti-xCT (ab37185, Abcam, 1:1000), anti-GPx4 (ab125066, Abcam, 1:1000), anti-ACSL4 (DF12141, Affinity, 1:1000), anti-p53 (2524, CST, 1:1000), anti-FTH1 (DF6278, Affinity, 1:1000), anti-Nrf2 (12721, CST, 1:1000), anti-LaminB (13435, CST, 1:1000), anti-β-actin (3700, CST, 1:1000), and anti-GAPDH (abs100005, Absin, 1:1000). Second antibodies were peroxidase-conjugated goat anti-rabbit and anti-mouse IgG (1:5000) (Zhongshan Golden Bridge Biotechnology, Beijing, China). To visualize the proteomic bands, an enhanced western luminescent detection kit (Vigorous Biotechnology, Beijing, China) was employed. The densitometry results were quantitatively analyzed by using the Image J software, with β-actin, GAPDH, or LaminB bands being normalized/internal controls as appropriate.
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2

Protein Expression Analysis in Cells

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RNA levels were measured by qPCR analysis following to the manufacturer’s instructions. Western blot analysis was also performed according to the manufacturer’s protocol. Briefly, cells or tissues were lysed in RIPA buffer. The protein concentrations were then normalized using a BCA assay kit (Solarbio, Beijing, China). Anti-GAPDH (1:1000, ABclonal, Wuhan, China, AC001), anti-STK33 (1:1000, Abcam, Cambridge, MA, USA, ab206296), anti-MDR1 (1:1000, Affinity, Jiangshu, China, AF5185), anti-GSS (1:1000, Affinity, DF6214), anti-MDM4 (1:1000, Affinity, DF8676), anti-P450 3A4/5 (1:1000, Affinity, AF5312), anti-E-cadherin (1:1000, Affinity, AF0131), anti-SLC7A11 (1:1000, Affinity, DF12509), anti-GPX4 (1:1000, Affinity, DF6701), anti-FTH1 (1:1000, Affinity, DF6278), anti-FSP1 (1:1000, Affinity, DF6516), anti-KRas (1:1000, Affinity, DF6324), and anti-ubiquitin antibodies (1:1000, Affinity, AF0289) were used in this study.
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3

Immunofluorescence Staining of Brain Sections

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Immunofluorescence staining was performed as previously described [35 (link)]. Frozen brain sections (7 μm) or cultured cells on coverslips were fixed in 4% paraformaldehyde for 10 min. Then, they were treated with Immunostaining Permeabilization Buffer with Triton X-100 (Beyotime, Shanghai, China) for 30 min and were blocked with Immunol Staining Blocking Buffer (Beyotime, Shanghai, China) for 60 min. These samples were incubated with specific primary antibodies for ACSL4 (Affinity, DF12141, 1 : 200), FTH (Affinity, DF6278,1 : 200), GPX4 (Affinity, DF6701,1 : 200), NeuN (MilliporeSigma, MAB377X, 1 : 200), 8-hydroxyguanosine (8-OHdG) (Bioss, bs-1278R, 1 : 100), and SIRT1 (Santa Cruz, sc-74465, 1 : 50) in Universal Antibody Diluent (New Cell & Molecular, Suzhou, China) at 4°C overnight. Then, the samples were slowly washed three times with phosphate-buffered saline with 0.5% Tween-20 (PBST) and incubated with corresponding secondary antibodies (Cy™3-conjugated goat antirabbit IgG or goat antimouse IgG, 1 : 200) for 1 h at room temperature (RT). After washing 3 times with PBST, the samples were counterstained with 4,6-diamidino-2-phenylindole (DAPI, MilliporeSigma, 1 : 2000) for 10 min at RT. Fluorescence was visualized by a fluorescence microscope (ZEISS, Scope A1, Germany).
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4

Immunohistochemical analysis of protein expression

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Briefly, the human NP tissues embedded in paraffin were cut in 15 μm sections. Then, the sections were deparaffinized with environment-friendly de-paraffin liquid (G1128, Servicebio, China) and dehydrated using gradient alcohol. The membrane-breaking solution (G1204, Servicebio, China) was used under the protocols. The sections were subsequently incubated with 3% BSA for 25 min to block the endogenous peroxidase, then with primary antibody against Sirt3 (#AF5135, Affinity, China, 1:200), GPX4 (#DF6701, Affinity, China, 1:200), FTH (#DF6278, Affinity, China, 1:50), ADAMTS5 (#DF13268, Affinity, China, 1:150), and MMP3 (#AF0217, Affinity, China, 1:100), at 4 °C overnight. On the second day, the sections were incubated with HRP-conjugated Goat Anti-Rabbit IgG H&L (511,203, ZENBIO, China, 1:300) for 1 h, finally the counterstaining was performed with hematoxylin solution for 5 min. The images of stained sections were obtained using the light microscopy (BX43, Olympus, Japan).
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5

Ferroptosis Regulators and Cellular Signaling

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Bavachin was purchased from MCE (China), and pifithrin-α (PFT-α), deferoxamine (DFO), ferrostatin-1 (Fer-1), and liproxstatin-1 (Lip-1) were purchased from Topscience (China). Vitamin E was purchased from Beyotime (Shanghai, China). Rabbit polyclonal anti-transferrin receptor antibody (TFRC, AF5343, 1 : 1000), rabbit polyclonal anti-divalent metal transporter-1 antibody (DMT1, DF12740. 1 : 1000), rabbit polyclonal anti-ferritin light chain antibody (FTL, DF6604, 1 : 1000), rabbit polyclonal anti-ferritin heavy chain antibody (FTH, DF6278, 1 : 1000), rabbit polyclonal anti-SLC7A11 antibody (DF12509, 1 : 1000), rabbit polyclonal anti-P53 antibody (AF0879, 1 : 1000), rabbit polyclonal anti-STAT3 antibody (AF6294, 1 : 1000), rabbit polyclonal anti-p-STAT3 (705) antibody (AF3293, 1 : 1000), and rabbit polyclonal anti-glutathione peroxidase-4 antibody (GPX4, DF6701, 1 : 1000) were purchased from Affinity Bioscience (China). HRP goat anti-rabbit IgG was purchased from Earthox (USA).
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6

Western Blot Protein Quantification and Analysis

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The BCA kit (Cwbio, Jiangsu, China) was utilized to quantify the protein isolated from cells and tissues, followed by being separated with the 12% SDS-PAGE. The separated protein was transferred from the gel to the PVDF membrane, which was further introduced with 5% skim milk. Then, the membrane was introduced with the primary antibody against P-GP (1:1000, 22336-1-AP, Proteintech, USA), ERCC1 (1:1000, DF7255, Affinity, USA), NOX1 (1:1000, 17772-1-AP, Proteintech, USA), COX2 (1:1000, bs-10411R, Bioss, USA), GPX4 (1:1000, 67763-1-Ig, Proteintech, USA), FTH1 (1:1000, DF6278, Affinity, USA), ACSL4 (1:1000, DF12141, Affinity, USA), FASN (1:1000, 66591-1-Ig, Proteintech, USA), USP14 (1:1000, sc-515,812, Santa Cruz, USA), and β-actin (1:1000, HC201, TransGen Biotech, China). The second antibody (1:2000, GB23303, Servicebio, China) was subsequently added to be incubated for 90 min. Finally, ECL reagent was added to expose the bands, which were further quantified with the ImageJ software.
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7

Western Blot Analysis of Ferroptosis Markers

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We extracted the lysate from lung tissues or cells in a RIPA buffer, and protein contents were quantified by the BCA protein assay kit (P0011, Beyotime, China). Protein samples (50 μg) from each group underwent the 10% SDS-PAGE gel electrophoresis and then transferred to a PVDF membrane. After being blocked with non-fat dry milk (5%), these blots were hatched with the primary antibodies all night at 4°C. The proteins used in the study were as follows: GPX4 (DF6701, Affinity Biosciences, Jiangsu, China), ACSL4 (1:1,000, A14439, ABclonal Technology, Wuhan, China), SFXN1 (1:1,000, DF12509, Proteintech Group, Wuhan, China), LC3 (1:1,000, AF5402, Affinity Biosciences, Jiangsu, China), NCOA4 (1:10,000, DF4255, Affinity Biosciences, Jiangsu, China), FTH1 (1:1,000, DF6278, Affinity Biosciences, Jiangsu, China), SLC7A11 (1:1,000, DF12509, Affinity Biosciences, Jiangsu, China), YAP1 (1:1,000, DF3182, Affinity Biosciences, Jiangsu, China), or β-actin (BM0627, Boster Biological Technology, Wuhan, China). Finally, the proteins were incubated with HRP-conjugated secondary antibody (1:5,000, Proteintech) at room temperature for 1 h. An ECL kit (Beyotime) was applied to detect the bands, which were assayed by the ImageJ software.
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