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6 protocols using ab109725

1

Macrophage Polarization and Skin Fibrosis

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Western blotting was performed to explore M2 polarization of macrophages and the level of skin fibrosis. The following antibodies were used in the western blotting assays: alpha-smooth muscle actin (α-SMA, 1:100, ab8211, Abcam); IL-10 (1:100, ab34843, Abcam); type I collagen (Col Ⅰ, 1:200, ab260043, Abcam); IL-6 (1:500, ab6672, Abcam); cytokeratin 17 (1:500, ab109725, Abcam); TNF-α (1:1000, ab6671, Abcam); arginase-1 (1:500/1:50, #93668, Cell Signaling Technology); CD206 (1:1000, #PA5-114310, Invitrogen); Smad1/5 (1:500, bs-2973R, Bioss Antibodies); phospho-Smad1/5 (1:1000, bs-3418R, Bioss Antibodies); BMP4 (1:500, bs-1374R, Bioss Antibodies); and GAPDH (1:10000, ab181602, Abcam).
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2

Immunostaining Protocols for Cell and Tissue Analysis

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Immunocytochemistry (ICC) was essentially as described (19 (link)). Primary antibodies as noted above CK5 (1:100), CK17 (1:200); vimentin (1:200), or CK8/18 (1:2000) for 2 h, secondary antibodies (A11029, A11037, A11008, A11032, Invitrogen, 1:200) for 1 h, and counterstained with DAPI. Cells were imaged using the Olympus BX40 fluorescent microscope and channels merged in Adobe Photoshop 2021. Immunohistochemistry (IHC) was performed as previously described (33 (link)) using CK5 (rabbit, ab75869, Abcam, 1:200), CK17 (rabbit, ab109725, Abcam, 1:100), vimentin (mouse, 5G3F10, Cell Signaling Technologies, 1:100), or pan-CK (mouse ab86734, 1:400, abcam, Waltham, MA) antibodies and either fluorescent secondary antibodies as described and imaged using an Olympus BX40 fluorescent microscope, or ImmPRESS Peroxidase detection kit (Vector Laboratories).
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3

Immunohistochemical Analysis of FFPE Samples

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Archival formalin-fixed, paraffin-embedded (FFPE) tissue samples were stained for CK17 (Anti-Cytokeratin 17, Rabbit Monoclonal, clone EP1623, dilution 1:100, ab109725, Abcam, Cambridge, United Kingdom), PD-L1 (clone 22C3 for the discovery cohort and clone E1L33N for the validation cohort, respectively), and p16 (E6H4). Both a rabbit monoclonal and polyclonal CK17 antibody (ab109725 and ab53707, respectively) underwent extensive validation using CK17 highly expressing human SCC tissue and CK17 negative tonsil tissue as well as CK17 wild-type and knock-out mouse tissue (as previously described in [22 (link)]). Ultimately, clone ab109725 was selected based on the highest specificity for CK17. HPV status was determined based on p16 status for oropharyngeal tumors [24 ] and high-risk HPV RNA in situ hybridization for non-oropharyngeal tumors [25 (link)]. Detailed protocols are available in Supplemental Data S1.
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4

Immunostaining of CK5 and CK17 in Tissue

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Tissue sections were processed as above and were stained with antibodies specific for CK5 (rabbit, 1:200, ab75869, Abcam, Cambridge, UK) and CK17 (rabbit, 1:100, ab109725, Abcam) for 2 h at RT. Sections were blocked using HRP Blocking Reagent (Abcam) EnVision+/HRP Visualization (Agilent, Santa Clara, CA, USA) and DAB substrate kit (Agilent) were used to visualize staining. Sections were counterstained with hematoxylin and mounted with Permount Mounting Medium (Fisher Scientific, Waltham, MA, USA). Representative photographs were taken under a light microscope at ×20 magnification.
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5

Whole-Mount Immunofluorescence Staining of K17

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Whole-mount staining of K17 was completed as previously described (8 (link)). Briefly, whole-mount back-skin samples were permeabilized and blocked at 4°C overnight for 24 hours with 1× (PBS) + 0.5% Triton X-100, 2% bovine serum albumin and 20% normal goat serum (NGS), 1% dimethyl sulfoxide, and 100 mM maleic acid (pH at 7.5) before incubation with 1:50 (stock: 0.059 mg/ml) rabbit anti-K17 (ab109725, Abcam, Cambridge, UK) diluted in the blocking solution without NGS and left at 4°C for 24 hours. A secondary antibody conjugated with Alexa Fluor 647 (Invitrogen) was incubated at a 1:500 (stock: 2 μg/ml) dilution in blocking solution without serum, for 24 hours at 4°C. Nuclei were revealed using a 4′,6-diamidino-2-phenylindole (DAPI) counterstain at 0.2 μg/ml overnight at 4°C. Tissue was cleared in RapiClear for 3 to 6 hours (SunJin Lab Co., Taiwan). Samples were then mounted with fluorescent mounting media (Dako, Glostrup, Denmark) on single concave microscope slides (Sail Brand, China). All experiments were approved by the Animal Ethics Committee at the University of Queensland.
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6

Western Blot Analysis of Apoptosis-Related Proteins

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Cells were washed with PBS and lysed by RIPA lysis buffer (Beyotime, Shanghai, China) with 1 mM phenylmethyl sulfonylfluoride (PMSF) (Beyotime, Shanghai, China). Protein concentrations were then quantified using a BCA protein assay kit (Beyotime, Shanghai, China). Subsequently, the proteins were denatured at 100°C for 10 min, loaded and separated on 10% SDS-PAGE gels and blotted onto PVDF membranes. Tris-buffered saline that contained 5% nonfat powdered milk was used to block non-specific binding for 1 h at room temperature. The membranes were incubated at 4°C overnight with the following antibodies: rabbit monoclonal K17 (ab109725, Abcam, Cambridge, MA, UK), rabbit polyclonal cleaved Caspase3 (ab2302, Abcam, Cambridge, MA, UK), rabbit polyclonal CyclinD1 (26939-1-AP, ProteinTech Group, Inc., Wuhan, China) and rabbit polyclonal GAPDH (10494-1-AP, ProteinTech Group, Inc., Wuhan, China). After washing, the membranes were incubated with HRP-conjugated secondary antibodies for 2 h at room temperature. Finally, ECL reagents (Thermo Scientific, Rockford, IL, USA) were used to detect the protein signals.
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