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11 protocols using ethanol

1

Osthol Toxicity Assessment Protocol

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For the toxicity assessment, Osthol (MW: 244.29; 98.0%), GC grade reagent was purchased from Santa Cruz Biotechnology (GC level). As a solvent for Osthol, ethanol (Junsei Chemicals; extra pure level) was used. Osthol 0.25 g was dissolved in ethanol, and diluted to obtain a 50 mL stock solution of 0.02 M. To adjust the concentration for each evaluation, the stock solution was diluted with culturing seawater. When dissolved, Osthol becomes alkaline. For this reason, we adjusted all solutions to pH 7.5±0.2 (the same as that of control group) at all concentrations.
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2

Synthesis of Mesoporous Silica Nanoparticles

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Copper(ii) nitrate trihydrate (Cu(NO3)2·3H2O, ≥98%), tetraethyl orthosilicate (TEOS, 98%) and hexadecyltrimethylammonium bromide (C16TAB, ≥98%) were purchased from Aldrich. Ammonium hydroxide (NH4OH, 28% in water) and ethanol (99.9%) were obtained from Junsei and Baker, respectively. The reagents were used as received without further purification.
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3

Antioxidant and Anti-Gout Potential Evaluation

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Potassium phosphate monobasic and dibasic, Folin-Ciocalteu’s phenol, xanthine oxidase, xanthine, allopurinol, dimethyl sulfoxide (DMSO), hydrochloric acid, tricholoroacetic acid (TCA), Tween 20, thiobarbituric acid (TBA), proline, sulfosalicylic acid, glacial acetic acid, ninhydrin, and toluene were obtained from Sigma-Aldrich Japan K.K. (Tokyo, Japan). Sodium acetate, acetic acid, aluminium (III) chloride hexahydrate, 1,1-diphenyl-2-picrylhydrazyl (DPPH), dibutyl hydroxytoluene (BHT), and gallic acid were purchased from Kanto Chemical Co. Inc. (Tokyo, Japan). Acetone, potassium peroxodisulfate, 2,2′-azinobis (3-ethylbenzothiazoline-6-sulfonic acid) (ABTS) were obtained from Nacalai Tesque, Inc. (Kyoto, Japan). Methanol and ethanol at analytical grade were obtained from Junsei Chemical Co.; Ltd. (Tokyo, Japan).
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4

Organic Synthesis of Aromatic Diamine Precursors

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Benzoin, sodium borohydride (NaBH4, ≥98.0%), 4-nitrobenzoyl chloride (4-NBC, 98%), methanol (MeOH, ≥99.8%), tetrahydrofuran (THF, ≥99.9%), N,N’-dimethylacetamide (DMAc, ≥99.8%), pyromellitic dianhydride (PMDA), and 4,4′-oxydianiline (ODA) were purchased from Sigma-Aldrich Korea (Seoul, Korea). Solvents such as N,N-dimethylformamide (DMF), dimethyl sulfoxide (DMSO), N-methyl pyrrolidone (NMP), chloroform (CHCl3), and ethanol were purchased from Junsei Chemical Co (Tokyo, Japan). As for 4,4-Diphthalic anhydride (6-FDA, ≥98.0%) and 10% palladium on carbon (Pd/C), they were purchased from Tokyo Chemical Industry Co. (TCI) (Tokyo, Japan). n-Hexane, ethyl acetate, and dichloromethane were purchased from Samchun Pure Chemicals (Pyeongtaek, Korea). Celite 545, which is a kind of diatomite whose main component is silica and is used to separate a catalyst from the reaction mixture, and γ-butyrolactone were purchased from Daejung (Siheung, Korea). The deionized water used in the experiments was purified by a Direct-Q®3 water purification system (EMD Millipore) (Busan, Korea). All purchased chemical reagents were used without further purification.
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5

Antioxidant and Antibacterial Evaluation

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Methanol, hexane, chloroform, ethyl acetate and ethanol were purchased from Junsei Chemical Co., Ltd., Tokyo, Japan. Potassium phosphate monobasic and dibasic, xanthine, xanthine oxidase, allopurinol, and hydrochloric acid were obtained from Sigma-Aldrich Corp., St. Louis, MO, USA. Reagents including 1,1-diphenyl-2-picrylhydrazyl (DPPH), sodium acetate, acetic acid, 2,2′-azinobis (3-ethylbenzothiazoline-6-sulfonic acid) (ABTS), potassium peroxodisulfate, and dibutyl hydroxytoluene (BHT) were supplied by Kanto Chemical Co. Inc., Tokyo, Japan. Four bacteria including Staphylococcus aureus, Escherichia coli, Bacillus subtilis, and Proteus mirabilis were provided by Sigma-Aldrich Corp., St. Louis, MO USA. All chemicals used were of analytical grade.
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6

Comprehensive Proteomic Analysis Workflow

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Acrylamide, acetonitrile, α-cyano-4-hydroxycinnamic acid, bis-Acrylamide, benzamidine, Bradford solution, p-coumaric acid, caffeic acid, 3-[(3-cholamidopropyl)dimethylammonio]-1-propanesulfonate hydrate (CHAPS), 1,4-dithiothreitol (DTT), ferulic acid, fluorescein (FL), γ-aminobutyric acid (GABA), gallic acid, 4-hydroxybenzoic acid, iodoacetamide, phenylisothiocyanate, syringic acid, sodium dodecyl sulfate (SDS), Trolox, trifluoroAcetic acid, thiourea, urea, and vanillic acid were purchased from Sigma Aldrich (St. Louis, MO, USA). Acetic acid, dipotassium phosphate, ethanol, hydrochloric acid, hexane, sodium hydroxide, monopotassium phosphate, methanol, and water were obtained from Junsei Chemical (Tokyo, Japan), and 2,2′-azobis(2-amidinoprpane) dihydrochloride solution (ABAP) was purchased from Wako Chemicals (Richmond, VA, USA). Pharmalyte (pH 3.5–10) and IPG Dry Strips (pH4–10 NL, 24 cm) were purchased from Amersham Biosciences and from Genomine Inc. (Pohang-si, Korea), respectively. Porcine trypsin was obtained from Promega (Madison, WI, USA).
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7

DPPH Radical Scavenging Assay

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The DPPH radical assay was performed as described by Kim et al.15 Each 20 μL extract sample was combined with 180 μL of 0.2 mmol L–1 DPPH (Sigma, St Louis, MO, USA) dissolved in ethanol (JUNSEI, Japan) and adjusted to a final volume of 200 μL. The mixtures were vigorously shaken and incubated for 30 min at room temperature in the dark. Absorbance was measured at 515 nm using a microplate reader. Neutralization of the DPPH radical was calculated using S (%) = 100 × (A0 − As)/A0, where A0 is the absorbance of the control (containing all reagents except the test compound) and As is the absorbance of the sample. Three technical replicates were measured per biological replicate.
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8

Antimicrobial Activity of Fatty Acids

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The molecular structures of the materials evaluated in the present study are shown in Fig. 1. Myristic acid (C14:0 fatty acid, ≥ 99%) was purchased from Sigma-Aldrich Co. LLC (St. Louis, USA) . Lactic acid, lauric acid (C12:0 fatty acid, ≥ 99%) , palmitoleic acid (C16:1 fatty acid, ≥ 99%) and 0.1 mol L -1 phosphate buffer solution (pH 6) were obtained from Fujifilm Wako Pure Chemical Industries Ltd. (Osaka, Japan) . Ethanol, sodium chloride, beef extract, and polypeptone were purchased from Junsei Chemical Co. (Tokyo, Japan) , Kanto Chemical Co., Inc. (Tokyo, Japan) , Nacalai Tesque Inc. (Kyoto, Japan) , and Nihon Pharmaceutical Co., Ltd. (Tokyo, Japan) , respectively. Agar powder was purchased from Nissui Pharmaceutical Co., Ltd. (Tokyo, Japan) . S. aureus (NBRC13276) and S. epidermidis (NBRC12993) were obtained from the National Institute of Technology and Evaluation (Tokyo, Japan) . Water was purified using a Demi-Ace Model DX-15 demineralizer (Kurita Water Industries Ltd., Tokyo, Japan) .
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9

Characterization of Biomolecular Compounds

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Crystal violet (CV), toluidine blue (TB), Congo red (CR), safranin O (SO), fluorescein isothiocyanate (FITC), (−)-riboflavin, β-carotene, (±)-α-tocopherol, pyridine (99.8%), and n-hexane (99%) were obtained from Sigma-Aldrich Korea Ltd. (Yongin-si, Gyeonggi-do, Korea) and used without further purification. Ethanol (99.5%), mEthanol (99.9%), and isopropyl alcohol (99.5%) were obtained from Junsei Chemical Co. Ltd. (Tokyo, Japan).
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10

Antioxidant Assay Protocol for Cell Lines

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Trolox, quercetin, fluorescein (FL), dimethyl sulfoxide (DMSO), 2′,7′-dichlorofluorescin diacetate (DCFH-DA), vanillic acid, caffeic acid, syringic acid, p-coumaric acid, syringaldehyde, ferulic acid, and sinapic acid were purchased from Sigma-Aldrich, Inc. (St. Louis, MO, USA). Monopotassium phosphate, dipotassium phosphate, ethanol, methanol, hydrochloric acid, sodium hydroxide, hexane, acetic acid, acetonitrile, and water were obtained from Junsei Chemical Co., Ltd. (Tokyo, Japan), and 2,2′-azobis(2-amidinoprpane) dihydrochloride solution (ABAP) was purchased from Wako Chemicals Inc. (Richmond, VA, USA). HT-29, Caco-2, HeLa, and HepG2 cells were obtained from the American Type Culture Collection (ATCC) (Manassas, VA, USA). McCoy’s 5A, MEM, fetal bovine serum (FBS), phosphate-buffered saline (PBS), and Trypsin-EDTA were purchased from Welgene (Daegu, Korea). Dulbecco’s Modified Eagle Medium (DMEM) was purchased from HyClone Laboratories Inc., (South Logan, UT, USA). A MTT cell proliferation assay kit and a Cell Death Detection ELISAplus kit were purchased from Roche Ltd., (Indianapolis, IN, USA). The p-AKT, p-53, PTEN, β-Actin, Bax, Bcl-XL, and Mcl-1 were obtained from Cell Signaling Technology (Beverly, MA, USA). ECL prime western blotting detection reagent was purchased from GE Healthcare Life Sciences (Marlborough, MA, USA).
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