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7 protocols using anti caspase 3 8g10

1

Western Blot Analysis of Apoptosis Markers

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Whole-cell lysates were generated by the addition of 2× Laemmli buffer containing 10% β-mercaptoethanol to the cell pellets. Cell lysates were separated by SDS-PAGE and transferred to polyvinylidene difluoride (PVDF) membranes (Bio-Rad). Membranes were blotted with the following antibodies: anti-caspase-8 (1C12; Cell Signaling), anti-caspase-3 (8G10; Cell Signaling), anti-PCNA (D3H8P; Cell Signaling), and anti-β-actin (AC-15; Sigma-Aldrich). Peroxidase-conjugated secondary antibodies were used (BioLegend). Membranes were developed using enhanced chemiluminescence (ECL) (Thermo Scientific) and detected using a Nikon camera as previously described (82 (link)). Quantification analysis of blots was performed using ImageJ, and the β-actin signal was used as a control for normalization. Values are expressed as a percentage of the normalized signal from the mock-infected group.
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2

Comprehensive Antibody Characterization Protocol

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The primary antibodies used in this study were as follows: anti-BRG1 (EPNCIR111A) Abcam Cat# ab110641 (1:10,000); anti-Caspase3 (8G10), Cell Signaling Technology, Cat# 9665 (1:1000); anti-C-Caspase 3, Cell Signaling Technology, Cat# 9661 (1:1000); anti-PARP (46D11), Cell Signaling Technology, Cat# 9532 (1:1000); anti-Ki67 (B56), BD Biosciences, Cat# 550609 (1:500); anti-EpCAM (G8.8), BD Biosciences, Cat# 552370 (1:500); anti-ZO1, Invitrogen, Cat# 40-2200 (1:500); anti-8-OHd G, Abcam, Cat# ab48508 (1:500); anti-LC3A/B (D3U4C), Cell Signaling Technology, Cat# 12741 (1:1000); anti-ATG16L1 (D6A5), Cell Signaling Technology, Cat# 8089 (1:1000); anti-PCNA, Santa Cruz Biotechnology, Cat# SC-7909 (1:1000); anti-P-H3, Cell Signaling Technology, Cat# 9701 (1:1000); anti-E-Cadherin, Cell Signaling Technology, Cat# 3195T (1:1000); anti-DCLK1, Abcam, Cat# ab31704 (1:500); anti-Claudin1, Cell Signaling Technology, Cat# 4933T (1:1000); anti-ChgA, Abcam, Cat# ab715 (1:1000); anti-Hes1, Abcam, Cat# ab71559 (1:500). Raw data of immunoblotting can be found in the source data file.
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3

Evaluation of Epithelial-Mesenchymal Transition Markers

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The primary antibodies used anti-E-cadherin (Clone 36; BD Transduction Laboratories, San Jose, CA, USA), anti-ZEB1 (H-102; Santa Cruz), anti-actin (C-2; Santa Cruz), anti-FLASH (M-300; Santa Cruz), anti-caspase-3 (8G10; Cell Signaling Technology Inc, Danvers, MA, USA), anti-cleaved PARP-1 (D214; Cell Signaling), anti-lamin A/C (4C11; Cell Signaling), anti-ubiquitin (P4D1; Cell Signaling), anti-phospho-SMAD2 (D27F4; Cell Signaling), anti-SMAD2/3 (D7G7; Cell Signaling), anti-SNAIL (C15D3; Cell Signaling) and anti-SLUG (C19G7; Cell Signaling) were obtained commercially. Secondary antibodies horseradish peroxidase-conjugated anti-mouse and anti-rabbit (1:5000) were from Jackson Laboratories (West Grove, PA, USA). Gemcitabine was purchased from Tocris (Bristol, UK). MG132 and TGFβ were purchased from Cell Signaling.
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4

Inhibition of p300 Enhances Gemcitabine-Induced Apoptosis

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Culture media (DMEM), fetal bovine serum (FBS) and penicillin/streptomycin (P/S) were obtained from Gibco (Grand Island, NY). Anti-p300 (N-15; sc-584) and anti-SP1 (PEP2; sc-59) antibodies were obtained from Santa Cruz Biochemistry (Santa Cruz, CA). Anti-Caspase3 (8G10; #9662), anti-cleaved Caspase3 (5A1E; #9664), anti-Caspase8 (8G10; #9662), anti-Caspase9 (8G10; #9662), anti-cleaved PARP (D64E10; #5625), anti-γ-H2AX (20E3; #9718), anti-Acetyl Histone H3 (Lys9) (C5B11; #9649), anti-Acetyl Histone H3 (Lys27) (D5E4; #8173), and anti-Histone H3 (D1H2; #4499) antibodies were obtained from Cell Signaling Technology (Danvers, MA). Anti-β-actin antibody (AC-15; A5441) was obtained from Sigma-Aldrich (St. Louis, MO). Gemcitabine hydrochloride (G6423) and the p300 inhibitor C646 (SML0002) were obtained from Sigma-Aldrich.
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5

Catechins and Apoptosis Induction

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Catechins (Pharmanex, USA, each capsule contains EGCG 95 mg, ECG 37 mg, EGC 15 mg), EGCG (Sigma-ALDRICH, E4143, C22H18O11, MW: 458.37), ECG (Shanghai Winherb Medical Technology Co., Ltd, C22H18O10, MW: 442.37) and EGC (Shanghai Winherb Medical Technology Co., Ltd, C15H14O7, MW: 306.27) were prepared at the concentration of 10 mM with RPMI 1640 medium (GIBCO-BRL, Grand Island, NY, USA). Arsenic trioxide (As2O3, Sigma-ALDRICH, A1010, MW: 197.84) was dissolved in RPMI 1640 medium as 5 mM solution. All-trans-retinoic acid (ATRA, Sigma-ALDRICH) was dissolved in ethanol as 100 μM solution. Pan-caspase inhibitor ZVAD-FMK (627610) was from Merck & Co. Inc. Bortezomib was from Millennium Pharmaceuticals (Cambridge, MA, USA). The primary antibodies against β-actin (13E5, #4970), anti-caspase-3 (8G10, #9665), anti-caspase-8 (D35G2, #4790), anti-caspase-9 Antibody (#9502), anti-PARP Antibody (#9542), anti-Bcl-2 (D55G8, #4223), anti-Bax (D2E11, #5023), anti-Bcl-xL (54H6, #2764) were from Cell Signaling (Beverly, MA, USA). Mouse monoclonal anti-PML Protein (ab57276) was from Abcam (Hongkong). The secondary antibody ImmunoPure Goat Anti-Rabbit IgG (#31460) was from Thermo Scientific (USA). Goat anti-mouse IgG (PB001) was from Shanghai Immune Biotech Ltd (ImB, CHINA). Chemiluminescence phototope-horseradish peroxidase kit (WBKLS0100) was from Millipore (Germany).
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6

Analysis of UBE2L6 regulation and function

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The authenticity of Myc-VCP, Myc-UBE2L6 and HA-ISG15 was confirmed by DNA sequencing. The siRNA targeting UBE2L6 (sc-41685) and siRNA control (sc-37007) were purchased from Santa Cruz Biotechnology, Inc., CA, USA. Western blot and immune-fluorescence were done according to standard protocols. Antibodies and fluorescent dye used in this study are anti-UBE2L6 (ab71800, Abcam), anti-Tubuline (T8203, Sigma), anti-Caspase 3 (8G10, Cell Signaling Technology, Beverly, MA, USA), anti-GAPDH (6C5, Santa Cruz), anti-Ki-67 (610969, BD Biosciences, San Diego, CA), anti-VCP (ab109240, Abcam), anti-ATGL (F7, Santa Cruz), anti HA (ab18181, Abcam). Secondary antibodies are anti-Rabbit/mouse IgG-HRP conjugate (Bio-Rad), Alexa fluor 594 goat anti-rabbit IgG (H+L), Alexa fluor 488 goat anti-mouse IgG (H+L) (Invitrogen). DAPI was from Beyotime (Hangzhou, China). IFN-αwas purchased from Life technologies (PHC4014, Grand Island, NY, USA).
The blots were visualized using enhanced chemiluminescent detection (Pierce, Rockford) with image detection on XDBF-1 film (Eastman Kodak, Rochester, NY, USA). Immuno-fluorescence images were taken on a Nikon A1 confocal microscope (Nikon, Tokyo, Japan).
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7

Antibodies for Protein Analysis

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Antibodies used in this study were anti-α-tubulin (DM1A, Sigma-Aldrich), anti-Caspase-7 (C7, Cell Signaling), anti-Caspase-3 (8G10, Cell Signaling), anti-GFP (clone B-2, Santa Cruz and ab1218, Abcam), hnRNP I (sc-133667, Santa Cruz), anti-PRPF6 (sc-48786, Santa Cruz), anti-PRPF8 (ab87433, Abcam), anti-TAP (PAP) (Sigma-Aldrich), anti-hSnu66 (A301–423A, Bethyl), anti-SC35 (for immunofluorescence: ab11826, Abcam; for immunoblotting: #556363, BD Biosciences), anti-Son (HPA023535, Sigma-Aldrich), anti-2,2,7-trimethylguanosine (K121, Calbiochem), anti-U1A (ab55751, Abcam), anti-U2AF65 (ab37483, Abcam), anti-Sm antigen Y12 (ab3138, Abcam). For immunofluorescence Alexa Fluor 488- and Alexa Fluor 555-labeled secondary goat anti-mouse and donkey anti-rabbit/anti-mouse antibodies from Invitrogen were used. Hub1-specific antibodies against recombinant S. cerevisiae Hub1 and human Hub1, respectively, were affinity-purified from serum of immunized rabbits.
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