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Opera phenix

Manufactured by PerkinElmer
Sourced in United States, United Kingdom, China

The Opera Phenix is a high-content screening system designed for cellular imaging and analysis. It combines advanced microscopy, automation, and image analysis capabilities to enable multidimensional live-cell and fixed-cell assays. The system is optimized for a variety of cell-based applications, providing researchers with a powerful tool for cell-based screening, phenotypic profiling, and high-resolution imaging.

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172 protocols using opera phenix

1

Axon Length Quantification in Neuronal Cells

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SH-SY5Y cells were seeded in 384-well plates at 8 × 102 cells/well, incubated for 15 h, and then replaced with DMEM/F12 medium containing 7.5 µM retinoic acid, 1% FBS and 1% penicillin-streptomycin for 24 h. The medium was further changed twice, every 24 h. The medium was then replaced with the compound-containing medium and incubated for 48 h. After removing medium, the cells were fixed by adding 4% PFA for 15 min. Each well was washed with PBS, added 3% BSA, and incubated for 60 min at 37 °C. βIII Tubulin antibody as primary antibody (MAB1195; R&D Systems, Minneapolis, MN) and Alexa Fluor 488 goat anti-mouse IgG as secondary antibody (A-11001; Thermo Fisher Scientific) were used to stain the cells. Cell axon length was measured using Opera Phenix (PerkinElmer).
Primary cerebellum neurons were seeded in 96 well plates at 1 × 104 cells/well, cultured for 24 h. The medium was then replaced with the compound-containing medium and incubated for 48 h. After removing medium, the cells were fixed by adding 4% PFA for 15 min. Each well was washed with PBS, added 3% BSA, and incubated for 60 min at 37 °C. Tau1 antibody as primary antibody (MAB3420A4; Merck/Sigma-Aldrich, Munich, Germany) and Alexa Fluor 488 goat anti-mouse IgG as secondary antibody (A-11001; Thermo Fisher Scientific) were used to stain the cells. Cell axon length was measured using Opera Phenix (PerkinElmer).
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2

Cell Proliferation and Cytotoxicity Screening

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CFBE41o cells stably expressing F508del-CFTR and the HS-YFP
were plated at a low density (5000 cell/well) on 96-well plates suitable
for high-content imaging. After 6 h, cells were treated with different
concentrations of test compounds or vehicle alone (DMSO). Cell proliferation
was monitored (by exploiting the YFP signal to determine the area
covered by cells) for 48 h using the Opera Phenix (PerkinElmer) high-content
screening system. Alternatively, to monitor the cytotoxic effect of
high concentrations of test compounds, CFBE41o cells
were plated (10,000 cell/well) and treated (after 6 h) with test compounds
or vehicle alone (DMSO). After 24 h, cells were counterstained with
Hoechst 33342 and propidium iodide to visualize total cells and apoptotic
cells, respectively, and imaged by using the Opera Phenix (PerkinElmer)
high-content screening system. Data are expressed as means ±
SEM, n = 6. Reproducibility of results was confirmed
by performing three independent experiments. Statistical significance
was tested by parametric ANOVA followed by the Dunnet multiple comparisons
test.
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3

Microneedle Characterization and Surfactin Analysis

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The different microneedles replicated from silicone molds were observed under a stereomicroscope (JSZ6S, Jiangnan Novel Optics) and captured by CCD (Oplenic digital camera). The integrity of the microneedles was recorded by immersing them in phosphate-buffered saline (PBS, pH 7.4) after days 1, 3, and 7. Surfactin extraction from B. subtilis was evaluated by a liquid phase mass spectrometer (LCMS6120, Agilent Ltd.). Living bacteria in the LMNs were stained by SYTO and observed by Opera Phenix (PerkinElmer Inc., UK).
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4

Measuring Mitochondrial Function in SHSY5Y Cells

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Mitochondrial function in SHSY5Y cells was measured by using the Seahorse XFe96 Extracellular Flux Analyser (Agilent). For treatment with USP30Inh-1 8000 cells per well were seeded in the Seahorse 96 well plate and left to attach overnight. Next day, cells were treated with different USP30Inh-1 concentrations for 24 h. On the assay day, cell culture media was washed and replaced with fresh assay media (XF basic media; Agilent), supplemented with 10 mM glucose, 2 mM l-glutamine and 1 mM sodium pyruvate (pH was adjusted to 7.4). The plate was incubated at 37°C for equilibration for 1 h before loading to the analyser. Mitochondrial respiration was measured by using the Mito-Stress Test (Agilent) as per manufacturer's instructions. Oligomycin (1 µM), FCCP (1.2 µM), rotenone (1 µM) and antimycin A (1 µM) were sequentially added to cells to determine mitochondrial respiration parameters. For the normalisation step, 1 µg/ml Hoechst 33342 (Thermo Fisher) was added to the cells and incubated for 10 min before imaging on the PerkinElmer Opera Phenix.
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5

Automated Yeast Imaging and Microscopy

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Yeast cultures were prepared for microscopy and imaged as previously described2 (link), 3 (link), 6 (link), 60 (link). Briefly, haploid wild-type MATa strains expressing fluorescent protein fusions from SGA final selection plates were grown at 30°C in low fluorescence synthetic minimal medium with Geneticin (200μg/mL) and Noursoethricin (100μg/ml). Cells were transferred to 384-well PerkinElmer CellCarrier Ultra imaging plates and centrifuged for 1 minute at 500 g before imaging. Micrographs were obtained on an Opera Phenix (PerkinElmer) automated spinning disc confocal microscope. All imaging was done with a 63× water immersion objective. GFP was excited using a 488 nm laser and emission collected through a 520/35 nm filter. tdTomato was excited using a 561 nm laser, and emission collected through a 600/40 nm filter. E2Crimson was excited using a 640 nm laser, and emission collected through a 690/50 nm filter.
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6

Mitochondrial Membrane Potential Assay

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The membrane-potential-sensitive dye JC-1 kit and TMRE kit were used to measure mitochondrial membrane potential according to the manufacturer’s instructions. The cells were directly examined by Opera Phenix (PerkinElmer, Waltham, MA, USA), and 20–25 fields were randomly selected in each condition.
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7

Calcium Imaging of Synchronized Neuronal Firing

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AAV6-syn-GCaMP6f purchased from Vigene Biosciences was diluted with NMM and applied to the differentiated hiPSC-neurons on day 7 to achieve 25k MOI (multiplicity of infection). After day 20, calcium imaging was performed by a high-content imaging machine (PerkinElmer Opera Phenix). With the longitudinal imaging, we determined that day 45 showed good level of synchronous firing. For each imaging, 2000 frames of images were continuously acquired at 3 Hz. During imaging, temperature and CO2 were maintained at 37°C and 5%, respectively. The raw images were processed by a constrained nonnegative matrix factorization (CNMF) algorithm [23 (link)] to determine whether individual neurons were fired at a given time point and to visualize the firing events in a raster plot. Then, the raster plot was transformed into cofiring ratio plot (number of fired neurons at a given time / number of total neurons). Finally, the coactivity plots were analyzed in terms of peak amplitude and frequency to evaluate the level of functional circuit formation.
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8

Chimeric Antigen Receptor T-cell Cytotoxicity Assays

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Chimeric antigen receptor T cells were plated in 1:1 effector:target (E:T) ratio with target cell lines. For flow cytometry-based assays, cells were targeted in round-bottom 96-well plates, and target cell viability was assessed by flow cytometry enumeration of live target cells (CD3, ToPro3; BV421 mouse-anti human CD3 Clone SP34-2; BD Biosciences, San Jose, California) and To-Pro-3 (Thermo Fisher Scientific). For imaging-based T-cell-dependent cellular cytotoxicity (TDCC) assays, target cells were plated in black flat bottom 96-well plates and cultured in an incubator equipped with an IncuCyte Zoom (Essen Bioscience, Ann Arbor, Michigan); phase contrast images (4 fields of view/well) were collected every 2 h for 48 h. Next, Hoechst (1:5000 dilution) and To-Pro-3 (1:5000 dilution) were added to each well, plates were incubated 15 min at 37°C then imaged on an Opera Phenix (Perkin Elmer, Waltham, Massachusetts) with a 20× objective (49 fields of view/well). Live cells were enumerated, and percent confluence was analyzed with IncuCyte Zoom 2016B software.
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9

Perfusion Imaging in Microvascular Networks

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Opera Phenix (Perkin Elmer) was used to produce images of perfusion. Perfusion images were taken at single z-plane for both brightfield and Cy3 channels (ex: 554 nm, em: 568 nm). 70 kDa Texas Red Dextran (ThermoFisher Scientific, D1864) was used to observe the perfusion of the parent channels via microvascular network in the gel chamber. Columbus software (Perkin Elmer) was used for further qualitative analysis. ImageJ was used to stitch different fields in wells if images were acquired at objectives higher than 10x, i.e., 20x, 40x.
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10

Quantitative RT-PCR and Flow Cytometry Analysis

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All qRT-PCR data are presented as a fold change in RNA normalized to the expression of two housekeeping genes: either GAPDH and ACTB or GAPDH and CREBBP. qRT-PCR data was analyzed using CFX Maestro (Biorad) qPCR analysis software and graphed using Prism (GraphPad, V9). Statistical differences in qTR-PCR were determined by two-way ANOVA. Statistical differences in flow cytometric analysis were compared by a two-tailed t test. For high-throughput screening any compounds that showed increase in secNLuc activity that were greater than two standard deviations above the DMSO vehicle control were considered initial hit. Quantification of percent MBP+ cells in human OPCs upon treatment with the molecules was performed using imageJ, cell count.52 (link) For the primary mouse OPCs, the cells were imaged on the Opera Phenix (Perkin Elmer), 21 images per well were analyzed and quantification performed using the built-in Harmony software 4.9 (Perkin Elmer).
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