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29 protocols using lsm 710 laser

1

Confocal Microscopy for CRBN Localization

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Confocal microscopy assay for subcellular localization of CRBN was performed as previously described (16 (link), 22 (link), 24 (link)). Briefly, THP-1 cells were treated with or without LPS (200 ng/ml) for 30 min, and stained with MitoTracker Red, anti-CRBN antibody, and DAPI, as described (16 (link)). Cells were imaged on a Zeiss LSM 710 laser-scanning confocal microscope (Carl Zeiss, Jena, Germany). For LC3 puncta assay, cells were cultured on glass coverslips for overnight. The cells were fixed with paraformaldehyde (4%), and treated with 0.2% Triton X-100 (0.2%) for cell permeabilization in ice for 30 min. Immunofluorescence microscopy assay was performed as previously described (22 (link), 23 (link)). Slides were mounted in VECTASHIELD mounting medium (Vector Laboratories, Ca# H-1000), and examined under an LSM 710 laser-scanning confocal microscope (Carl Zeiss).
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2

Immunohistochemical Analysis of HMGA2 Expression

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Forty‐μm‐thick coronal sections from perfusion‐fixed NF53 xenografts were cut using a Vibratome and processed for standard immunohistochemical staining. Mouse tumor‐bearing brain sections perfused with 4% PFA were washed in PBS, then blocked for 1 h with 3% donkey serum, 0.25% Triton X‐100, and probed for HMGA2 (1 : 250). Images were acquired with a Zeiss LSM 710 laser scanning confocal microscope (Zeiss). IHC for HMGA2 in U87 xenograft sections and human GB tissues (5 μm) was performed as described (Thanasupawat et al., 2015). Tissue sections were counterstained with hematoxylin prior to imaging with a Zeiss A2 microscope (Zeiss).
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3

Visualizing Transgene Expression in Roots

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The transgenic roots were first evaluated for GFP fluorescence with a SMZ800 Stereoscopic Microscope (Nikon) and analyzed for transgene expression in RT-PCR. Three to five individual roots were selected from the confirmed lines and mounted in 100 mM phosphate buffered saline (PBS) pH 6.5 prior to observation in confocal microscopy. Zeiss LSM710 laser-scanning confocal microscope (Zeiss) was used to detect the GFP signal of the SU:UGT76C2-GFP and SU:GFP. GFP was excited at 488nm and detected between 500 and 535 nm. Images were processed using Zeiss ZEN software and Adobe Photoshop software.
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4

Visualizing Transgenic P. tricornutum

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Positive transgenic P. tricornutum colonies were inoculated into f/2 liquid medium containing 100 μg/mL Zeocin for one week of growth. The green fluorescence signals were observed and recorded under a ZEISS LSM710 laser scanning confocal microscope (Carl Zeiss, Jena, Germany) with an excitation wavelength of 488 nm and emission wavelength of 510–540 nm for eGFP and 625–720 nm for chloroplast autofluorescence.
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5

Cardiomyocyte Morphometry by Confocal Imaging

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Cardiomyocytes were visualized by iFluor 594-labeled phalloidin (1:1000, Abcam, UK) staining actin and ECM was visualized by staining collagen III (ab 7778 1:400, Abcam, UK). Each slide was objected to 10 images. Morphometric analysis was performed using the software Fiji (http://fiji.sc). An average area value from each heart was calculated by the use of the measurements of 30–50 cells containing a central nucleus. Statistical analysis was performed using a two-tailed Student t test assuming unequal variances. Each pixel was calibrated to 0.83 μm according to Zeiss confocal data. Fluorescence images were collected at 20× objective using Zeiss LSM 710 laser-scanning confocal microscope (Zeiss, Oberkochen, Germany).
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6

Confocal Imaging of Mitochondrial Dynamics in Dopaminergic Neurons

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Confocal microscopy and image acquisition were performed with a Zeiss LSM710 laser scanning confocal microscope at a magnification of ×40 using procedures described previously (10 (link)). Images were scanned at 1024 × 1024 pixels, with a slice thickness of 1 μM and line and frame average of 4. Sequential scanning of the different channels was used to avoid bleed-through. Imaging settings were first determined for the control conditions in each experiment, which were then maintained for the other experimental conditions. Stacked Z-projections of images were created for DA neuron counts, and cell bodies stained with anti-TH were manually counted. The investigator was blinded to the individual genotype information while performing the neuronal counts. ImageJ software [National Institutes of Health (NIH)] was used to measure the integrated intensity of mito-GFP relative to TH. TH intensity in the 568-nm channel (marking DA neurons) was used to select regions of interest (ROIs). These ROIs were then transferred to the 488-nm channel to measure fluorescence intensity of mito-GFP–labeled mitochondria within the same ROIs.
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7

RNAscope Fluorescent Multiplex Assay

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Tissues were fresh frozen in OCT Cryomount (Histolab, 45830) and 5 µm sections were stained following the RNAscope Fluorescent Multiplex Assay (Advanced Cell Diagnostics, USA) instructions. Images were acquired with a Zeiss LSM 710 laser scanning microscope.
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8

Neuronal Activation Analysis in Brain Regions

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Image acquisition and neuronal activation analysis was performed on a Zeiss LSM710 laser scanning confocal microscope. Double-labeled images from the regions of interest—OFC, PrL, NA core and NA shell—were obtained using appropriate filter sets. Analysis of neuronal activation was performed by counting cFos-positive nuclei, in corresponding areas in two sections/region of interest/mouse (bregma 2.22/2.68 for OFC, bregma 1.94/2.34 for PrL, bregma 1.34/1.78 for NA core, and bregma 1.10/1.42 for NA shell; Franklin and Paxinos, 2008 ), by two independent observers unaware of genotype; Pearson’s r correlation (inter-reliability) between observers was r = 0.32, p < 0.01. Neuronal activation in each region was averaged over observers and subjected to statistical analyses.
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9

Immunofluorescent Analysis of Calvarial Bone

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The calvariae were decalcified in 10% EDTA solution, embedded in paraffin, and sectioned into 5- to 10-μm sections. Hematoxylin and eosin (H&E) staining was performed as per previously published protocols (Huang et al., 2020 (link)).
For immunofluorescent staining, the slides were pre-treated with 5% BSA blocking buffer for 1h at room temperature and stained for osteomarkers and macrophage-specific antigens using mouse monoclonal [65529.111] anti-bone morphogenetic protein 2 (BMP2) antibody (1/100, ab6285, Abcam), mouse monoclonal [OCG3] anti-osteocalcin (OCN) antibody(1/100, ab13420, Abcam), rabbit monoclonal anti-iNOS antibody (1/100, ab15323, Abcam), rabbit monoclonal anti-CD206 antibody (1/100, ab64693, Abcam), and mouse monoclonal [3A6] anti-IL-1β antibody (1/100, 12242, Cell Signaling). Sections were then stained with anti-mouse FITC and anti-rabbit TRITC secondary antibodies (1/200, Sigma), imaged using Zeiss LSM 710 laser scanning confocal microscope equipped with Zen image analysis software. For a vascular marker, sections were stained with rabbit polyclonal anti-CD31 antibody (1/100, ab28364, Abcam) and peroxidase-conjugated secondary antibody. ImageJ was used to measure positive immunostained cell number or % area per field (n = 4 per group). The positive cell number of iNOS and CD206 was divided by the number of nuclei per field.
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10

Immunofluorescent Imaging of SLC1A5 in HCT116 Cells

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HCT116 cells were fixed with methanol for 2 h and blocked with 5% BSA for 60 min at room temperature. After blocking, cells were incubated with FITC-P-LPK or anti-SLC1A5 (Abcam, Cat No. ab237704, 1:50) at 4 °C overnight. Then, anti-SLC1A5 cells were further incubated with APC conjugated anti-rabbit IgG secondary antibody (Thermo Fisher Scientific, Cat No. A-10931, 1:250) for 20 min at room temperature in a lucifugal chamber. Samples were washed with PBS for three times followed by treatment with DAPI. Samples were photographed using Zeiss LSM 710 laser confocal scanning microscopy.
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