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9 protocols using anti aurora b

1

Generation and Characterization of Anti-BEX4 Antibodies

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Mouse polyclonal antibodies against human BEX4 protein were generated in C57BL/6 mice. Briefly, purified GST-BEX4 protein was injected four times intraperitoneally. Rabbit polyclonal antibodies against C-terminal polypeptides 89–106 of human BEX4 protein were commercially generated (Youngin Frontier, Seoul, Korea). The other antibodies used in this study were as follows: anti-GFP, anti-PLK1, anti-CDK1, anti-aurora A, anti-cIAP-1, anti-cdc20 (Santa Cruz Biotechnology, Dallas, TX, USA), anti-actin (Sigma-Aldrich, St. Louis, MO, USA), anti-poly(ADP-ribose) polymerase-1 (PARP), anti-cleaved-caspase 9, cleaved-caspase 7, anti-active-caspase 3, anti-phospho-threonine (p-Thr) (Cell Signaling Technology, Danvers, MA, USA), anti-aurora B (BD Biosciences PharMingen, San Diego, CA, USA), anti-securin (PTTG1; Zymed, San Francisco, CA, USA), anti-Myc (Bethyl Laboratories, Montgomery, TX, USA), and Alexa Fluor (Invitrogen, Leek, The Netherlands). The following reagents were used: MG132, cycloheximide (CHX), dimethyl sulfoxide (DMSO) (AG Scientific, San Diego, CA, USA), nocodazole (Sigma-Aldrich), and PLK1 kinase inhibitor BI2536 (Axon Medchem, Groningen, Netherlands).
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2

Antibody Characterization and Detection

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Rabbit anti-CENP-R (10743-1-AP, Proteintech), mouse anti-tubulin (3873, Cell Signaling Technology), rabbit anti-GFP (50430-2-AP, Proteintech), mouse anti-His tag (23665, Cell Signaling Technology), mouse anti-FLAG (F3165, Sigma), anti-Cyclin B1 (12231, Cell Signaling Technology), anti-Hec1 (AB3613, Abcam), anti-Aurora B (611082, BD), anti-CENP-U (HPA022048, Atlas), and human anti-centromere auto-antibody (ACA, HCT-0100, Immunovision) were obtained commercially. For all western blotting, signals were detected using HRP-conjugated anti-mouse or anti-rabbit antibodies (Pierce).
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3

Antibody Concentrations for Western Blot and Immunofluorescence

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Commercially available antibodies were as follows: anti-Borealin (Santa Cruz Biotechnology) 10 μg/mL for western blot and immunofluorescence 5 μg/mL, anti-IQGAP1 (Santa Cruz Biotechnology) 1 μg/mL for western blot and immunofluorescence 2 μg/mL, anti-Aurora B (BD Biosciences) 6 μg/mL for immunofluorescence, anti-α-tubulin (Abcam) 5 μg/mL for immunofluorescence, anti-β-tubulin (Abcam) 5 μg/mL for immunofluorescence, and anti-β-actin (AC-74, Sigma) 0.1 μg/mL for western blot.
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4

Immunofluorescence Staining of Mitotic Proteins

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Cells were seeded onto poly-l-lysine-coated coverslips, fixed in ice-cold methanol or 2% formaldehyde, washed three times in PBS, permeabilized in 0.25% Triton X-100 in PBS for 10 min, blocked in 0.2% Triton X-100, 5% bovine serum albumin in PBS for 60 min before the required primary Abs were applied. The following Abs were employed: anti-Aurora-B (BD-Bioscience); anti-ECT2, anti-PRC1, anti-MKLP1, and anti-PLK1 (Santa Cruz); anti-HIPK2 (rabbit polyclonal Ab [19 (link)]); anti-p-histone-H2B-S14 (Cell Signaling); anti-p-histone-H2B-S32, anti-H2B, anti-53BP1, and anti-MgcRacGAP1 (Abcam); anti-β-tubulin-Cy3 and anti-α-tubulin-FITC (Sigma-Aldrich); secondary 488- or 594-conjugated Abs (Life Technologies). DNA was marked with Hoechst 33342 (Sigma-Aldrich) or Red-Dot2 far-red (Biotium). Cells were examined under an Olympus BX53 microscope using a cooled camera device (ProgRes MF) and with confocal microscope Zeiss LSM510-Meta.
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5

Immunoblotting Antibody Validation Protocol

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Rabbit anti-Nup62 (PA5-21882, Invitrogen), mouse anti-Nup62 monoclonal (sc-48389, Santa Cruz), rabbit anti-TIP60 (10827-1-AP, Proteintech), mouse anti-tubulin (3873, Cell Signaling Technology), rabbit anti-GFP (50430-2-AP, Proteintech), mouse anti-MBP (2396, Cell Signaling Technology), mouse anti-GAPDH (D4C6R, Cell Signaling Technology), mouse anti-FLAG (F3165, Sigma), anti-Cyclin B1 (12231, Cell Signaling Technology), anti-Aurora B (611082, BD), anti-Pericentrin (4448, Abcam), and human ACA (HCT-0100, Immunovision) were obtained commercially. For all western blotting, signals were detected using horseradish peroxidase-conjugated anti-mouse or anti-rabbit antibodies (Pierce).
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6

Antibody Characterization for Cell Biology

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KIF5B antibody is homemade and has been described elsewhere (WB: 1:2000; immunofluorescences: 1:250) [5 (link)]. Other antibodies were as follow: anti-actin (Sigma, WB 1:2000), anti-α-tubulin (Sigma, WB: 1:10,000; immunofluorescences: 1:2000), anti-Aurora B (BD transduction, WB: 1:1000; immunofluorescence: 1:100), Anti-clathrin heavy chain (BD transduction, WB: 1:1000; immunofluorescence: 1:100), Anti-GM130 (BD transduction, WB: 1:1000; immunofluorescence: 1:100), Anti-PRC1 (Abcam, WB: 1:1000; Santa cruz, immunofluorescence: 1:100), phalloidin conjugated with Alexa Fluor 488 (Molecular probes) for F-actin labeling (1:300), CellLight™ Tubulin-GFP BacMam 2.0 (Molecular probes) for labeling tubulin in live cells, transferrin from human serum conjugated with rhodamine (Molecular probes). For Western Blot secondary antibodies were from Zymed® Laboratories. For immunofluorescence, the secondary antibodies conjugated to Alexa 488, 555, 649 were from Jackson ImmunoResearch Laboratories or Molecular probes (Additional file 8: Movie S1).
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7

Immunostaining of Cardiac Muscle Cells

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Staining was performed as described28 (link),55 (link),56 (link). Primary antibodies: mouse monoclonal anti-mCherry (1:200, Clontech, 632543 or 1:50, DSHB, 3A11), anti-Tropomyosin (1:200, Sigma, T9283), anti-sarcomeric alpha Actinin (1:100, Abcam, ab9465), anti-Aurora B (1:200, BD Transduction Laboratories, 611083), anti-p27 (1:50, BD Transduction Laboratories, 610242), anti-Ki67 (1:250, Abcam, ab8191), rabbit polyclonal anti-Troponin I (sc-15368), anti-Cyclin A (sc-751), anti-cdc2 (sc-954), anti-Geminin (sc-13015) (all 1:50, Santa Cruz), anti-phospho-Histone H3 (Ser10) (1:200, Millipore, 06-570), anti-pRb807/811 (1:100, Cell Signaling, 9308), anti-mAG (1:300, MBL, PM011), anti p27 (1:50, SantaCruz, sc-528), anti-survivin (1:50, Novus, NB500-201K8), rat monoclonal anti-BrdU (1:100, Abcam, ab6326) and goat polyclonal anti c-kit (1:100, R&D Systems, AF1356). Immune complexes were detected with ALEXA 488- or ALEXA 594-conjugated secondary antibodies (1:200; Molecular Probes). DNA was visualized with DAPI (4′, 6′-diamidino-2-phenylindole, 0.5 g/ml). For BrdU, cells were cultured in 30 μM BrdU (neonatal: last 24 h, adult: last 5 days).
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8

Multiparameter Immunofluorescence Staining

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Staining was performed as described (24 (link)). Primary antibodies: anti-tropomyosin (1:200, Sigma), anti-actinin (1:100, Abcam), anti-aurora B (1:200) (both BD Transduction Laboratories), rabbit polyclonal anti-troponin I, anti-cyclin A, anti-cyclin dependent kinase 1 (cdc2), anti-geminin (all 1:50, Santa Cruz Biotechnology), anti-phospho-histone H3 (Ser10) (1:200, Millipore), anti-pRb807/811 (1:100, Cell Signaling), anti-mAG (1:300, MBL), rat monoclonal anti-5-Bromo-2-deoxyuridine (BrdU) (1:100, Abcam). Immune complexes were detected with ALEXA 488- or ALEXA 594-conjugated secondary antibodies (1:200; Molecular Probes). DNA was visualized with DAPI'(4” 6'-diamidino-2-phenylindole, 0.5 μg/ml). For BrdU, cells were cultured in 30 μM BrdU (Sigma) (neonatal: last 24–48 h, adult: last 5 days).
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9

Detecting Centromeric GFP-HJURP Localization

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Procedures are essentially as described (Bodor et al., 2012 ) (See also supplemental experimental procedures). To detect GFP-HJURPAxA-ΔCLacI on G2 centromeres, HeLa CENP-A-SNAP cells transiently expressing the construct were pre-extracted for 5min prior to fixation. Cells were counterstained using anti-CENP-T (Barnhart et al., 2011 (link)) and anti-Aurora B (1:100; BD transduction laboratories). GFP-HJURPAxA-ΔCLacI signal was amplified using GFP-Booster Atto488 (Chromotek).
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