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31 protocols using mab369

1

Immunocytochemistry Protocol for Synapsin and TH

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Immunocytochemistry was performed following previously published procedures.26 (link),27 (link) The following antibodies were used for immunofluorescence: chicken anti-GFP (Thermo Fisher, A-10262, 1:1000), rabbit ant-GFP (Thermo Fisher, A-11122, 1:1000). Guinea pig anti-synapsin 1/2 (Synaptic System, 106004, 1:500), mouse anti-TH (Sigma, T2928, 1:1000), rabbit anti-TH (Novus Biologicals, NB300-109, 1:1000), rat anti-DAT (Millipore MAB369 1:1000), Immunofluorescence was analyzed using a Nikon Ti-2 wide-field microscope or a Nikon CREST spinning disk confocal microscope. The same imaging parameters were set for each batch of culture. Image stacks were taken at different focal planes at 0.9 μm interval to include the whole cell and a maximum projection image was generated for each stack via ImageJ for analysis. All analyses were done manually. Synapsin 1/2-positive boutons were determined based on the bright punctate staining pattern.
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2

Quantifying Membrane Protein Expression

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Cells were incubated in vehicle or 1 mM chloroquine (CQ) for 4 hr. Cells were solubilized in RIPA, sonicated, and centrifuged. Supernatants were denatured in sample buffer, run on SDS-PAGE gel, and transferred to polyvinylidene fluoride membrane (PVDF) (Millipore, Bedford, MA). Membranes were immunoblotted for DAT (1:1000) (MAB369; Millipore), β-actin (1:5000) (A5441; Sigma-Aldrich; St. Louis, MO), and Na-K ATPase (1:100; Developmental Studies Hybridoma Bank (DSHB), Iowa City, Iowa). The secondary antibodies used were Li-COR goat anti-rat IRDye 800 (1:15,000), goat anti-rabbit IRDye 680 (1:15,000) and goat anti-mouse IRDye 680 (1:15,000). Band densities were quantified using Image Studio Odyssey Infrared Imaging System (LI-COR, Lincoln, Nebraska).
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3

Comprehensive Western Blot Analysis Protocol

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Whole cell lysates were prepared in a lysis buffer consisting of 50 mM Tris-HCL (pH 8.0), 250 mM NaCl, 1.5 mM MgCl2, 2 mM EDTA, 2 mM EGTA (pH 7.5), 1% Triton X-100, 1% NP-40, 1% deoxycholate, 1% SDS, 1 mM DTT, 2 mM PMSF, 1 mM sodium orthovanadate, 10 mM NaF, 20 mM glycerol phosphate, 1 mM benzamidine, 100 μg/mL soy trypsin I, and protease and phosphatase inhibitor cocktail (Thermo Scientific). The protein concentrations were determined with the Bradford protein assay kit (Bio-Rad). Cell lysates containing equal amounts of protein were separated on a 12% SDS-polyacrylamide gel. After separation, proteins were transferred to a nitrocellulose membrane, and nonspecific-binding sites were blocked by treating with the LI-COR blocking buffer. The membranes were then incubated overnight with primary antibodies directed against TH (Millipore AB-152; 1:1000), DAT (Millipore MAB369; 1:1000), and TujI (Millipore MAB1637; 1:1000). The primary antibody treatments were followed by treatment with IR800-conjugated anti-rabbit or Alexa Fluor 680-conjugated anti-mouse or Alexa Fluor 680-conjugated anti-rat secondary antibody for 1 h at room temperature. To confirm equal protein loading, blots were reprobed with a GAPDH antibody (1:5000). Western blot images captured with the Odyssey IR Imaging system (LI-COR) were analyzed using Odyssey 2.0 software.
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4

Quantifying Dopamine Transporter Expression

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Rat anti-DAT (MAB369; Millipore; 1:2000 dilution) or rabbit monoclonal anti-DAT (AB184451, Abcam, 1:1000 dilution for Fig. S2, A and B only), rabbit anti-TH (AB152, Millipore, 1:10,000 dilution), rabbit anti-pSer40 TH (AB5935, Millipore, 1:5000 dilution), mouse antitransferrin receptor (clone H68.4, Thermo Fisher; 13-6800). Secondary antibodies conjugated to horseradish peroxidase were all from Jackson ImmunoResearch, and immunoreactive bands were visualized by chemiluminescence using SuperSignal West Dura (Thermo Scientific). Nonsaturating immunoreactive bands were detected using either a VersaDoc 5000MP or a ChemiDoc imaging station (Bio-Rad) and were quantified using Quantity One software (Bio-Rad). Surface DAT was calculated by normalizing the biotinylated DAT signal to its corresponding amount of total DAT in that sample, detected in parallel from the same exposure of the same immunoblot. Raw surface DAT values are expressed as %total. For most experiments, DAT surface values following drug treatment were normalized to vehicle-treated samples, obtained from the contralateral hemislice in parallel. Surface DAT bands, and their corresponding total lysate, shown for each experiment were taken from the same exposure of the same immunoblot, and brightness/contrast levels were set identically for all blots. Boxed bands were cropped and rearranged for presentation purposes only.
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5

Protein Detection by Western Blot

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SDS-PAGE was performed on a 5–20% gradient gel (E-R520L, ATTO) and separated proteins were transferred onto a polyvinyldifluoridine membrane (Immobilon, Millipore). After blocking with 4% non-fat dry milk and 0.1% Triton X-100 in TBS, membranes were incubated with rat anti-DAT (cat no. MAB369, Millipore; 1:4000 dilution) or rabbit anti-PTPRZ-S prepared in our laboratory [19 (link)] (1:3000 dilution), followed by a treatment with HRP-conjugated anti-rabbit IgG (cat no. NA9340V, GE Healthcare; 1:3000 dilution) or anti-rat IgG (cat no. 1132-036-072, Jackson Immunoresearch; 1:4000 dilution), respectively. After washing, the blots were incubated with a chemiluminescent substrate (Luminata forte western HRP substrate, Millipore), and the chemiluminescence signal was immediately detected using a CCD camera system (Ez-capture MG, ATTO Bioscience & Technology) for a length of time sufficient to ensure detection without saturation.
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6

Immunohistochemistry of Brain Sections

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Immunohistochemical analysis of 40-μm brain sections were conducted essentially as described previously (Niu et al., 2013 (link), Niu et al., 2015 (link)). The following primary antibodies were used: BrdU (rat BU1/75, 1:500, Accurate Chemical), NeuN (MAB377, mouse, 1:500, Millipore), SOX2 (AB5603, rabbit, 1:500, Millipore), DCX (SC-8066, goat, 1:150, Santa Cruz Biotechnology), TH (chick, 1:1,000, Aves), DARPP32 (no. 2302, rabbit, 1:500, Cell Signaling Technology), CTIP2 (AB18465, rat, 1:500, Abcam), DAT (MAB369, rat, 1:200, Millipore), DDC (Ab3905, rabbit, 1:500, Abcam), VMAT2 (NBP1-69750, rabbit, 1:250, Novus), VGLUT1 (135311, mouse, 1:1,000, Synaptic), CHAT (AB144P, goat, 1:200, Chemicon), and GABA (A2052, rabbit, 1:500, Sigma). Alexa Fluor 488-, 594-, or 647-conjugated corresponding secondary antibodies from Jackson ImmunoResearch were used for indirect fluorescence. Images were taken using a Zeiss LSM510 confocal microscope. A Cell Counter software plugin in the ImageJ program was used to count cells. Data were obtained from one-sixth of the sections spanning the whole striatal region in each mouse. A representative image was shown from at least four similar ones. Confocal images were Z series projections unless otherwise indicated in the figure legends.
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7

Multicolor Immunohistochemistry of Brain Tissue

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Mice were anesthetized with pentobarbital and transcardially perfused with a 4% formaldehyde/PBS solution. The brains were then extracted and post-fixed overnight before being stored in PBS for later sectioning. Forty micron thick sections were blocked in a 5% bovine serum albumin, 0.2% Triton X-100, PBS solution for 4 h at room temperature. The sections were then incubated in a primary antibody/PBS solution overnight as follows: chicken anti-GFP (1/ 2000; Abcam, ab13970), rabbit anti-MOR (1/4000; Immunostar, 24216), rabbit anti-D2DR (1/500; Frontier Institute, D2R-Rb-Af750), and rat anti-DAT (1/5000; Millipore, MAB369). Sections were then washed three times in 0.2% Triton X-100/PBS before being incubated in secondary antibody solutions with Alexa488 goat anti-chicken (1/2000), Alexa568 goat anti-rabbit (1/1000), or Alexa568 goat anti-rat (1/1000) overnight (secondary antibodies were from Life Technologies). Following five washes in PBS, sections were mounted onto subbed slides, coverslipped with Fluoromount G (Electron Microscopy Sciences), and imaged with a Zeiss Lumar stereoscope and an Axiovert 200 microscope equipped with DAPI, eGFP, and Cy3 filter sets and an Axiocam MR fluorescence camera with Axiovision software (Zeiss).
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8

Quantitative Immunofluorescence Imaging of DAT

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Cells were seeded at 25,000 cells/well in 8 well chamber slides. Following treatment, cells were fixed with 10% formalin and then washed with PBS. Cells were then permeabilized using 0.1% Triton X-100 for 10 min at RT. Following this, cells were blocked with 2% BSA for 1 hour and incubated overnight with 1:1000 1:1000 DAT antibody (cat MAB369, Millipore). Cells were then incubated for 1 hour with rabbit anti-rat Alexa Fluor 488 secondary antibody. Images were taken using a Leica DMi8 SPE II confocal microscope using a 40× oil lens (N.A. 1.15) and fluorescence intensity quantified using ImageJ. Specificity was determined by omission or primary or secondary antibodies. In ImageJ, a minimum threshold was set for all imaging, and fluorescence intensity was measured over the same area from multiple images (3 images) from multiple chamber slide wells (4 wells), approximately the same number of cells were measured for all wells.
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9

Immunofluorescence Evaluation of DAT in CPu

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For the immunofluorescence evaluation of DAT in CPu, free-floating sections were rinsed in PB 0.1M, blocked, and permeabilized in 3% normal goat serum and 0.3% Triton X-100 in 0.1 M PB at room temperature (3 h), followed by incubation in the same solution with the primary antibody (monoclonal rat anti-DAT; 1:1,000, MAB369, Millipore, CA, United States) at 4°C (2-nights). Then, sections were rinsed three times in PB 0.1 M and incubated with the biotinylated secondary antibody (biotinylated goat anti-rat; 1:200) at room temperature (2 h), followed by incubation with AlexaFlour® 488-labeled streptavidin (1:500, Jackson ImmunoResearch Europe, Newmarket, United Kingdom) at room temperature (1 h). Afterward, sections were rinsed in PB 0.1 M and mounted onto super-frost glass slides using Mowiol® mounting medium (Costa et al., 2017 (link)). Omission of either the primary or secondary antibodies served as negative control and yielded no labeling (data not shown).
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10

Western Blot Analysis of Neurological Markers

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Following reconstitution with HEPES buffer and protein concentration quantification, 20 μg of protein/lane was separated on 4-12% Bis-Tris Mini gels (Schuh et al., 2009 (link)). Protein bands were then transferred to a PVDF membrane and blocked in 7.5% milk. Membranes were incubated overnight at 4°C with primary antibodies (tyrosine hydroxylase (TH, 1:2000, Millipore, catalog #AB152), dopamine transporter (DAT, 1:750, Millipore, catalog #MAB369), vesicular monoamine transporter 2 (VMAT2, 1:1000, (Cliburn et al., 2016 )), glial fibrillary acidic protein (GFAP, 1:2000, Abcam, catalog #AB10062), cluster of differentiation molecule 11B (CD11b, 1:1000, Abcam, catalog #AB52478), TNF-α (1:750, Abcam, catalog #AB9348), arginase-1 (ARG1, 1:500, BD Biosciences, catalog #610708), inducible nitric oxide synthase (iNOS, 1:500, Santa Cruz, catalog #SC-650), or glyceraldehyde-3-phosphate dehydrogenase (GAPDH, 1:5000; Santa Cruz. Cat #FL-335), followed by 1 hr incubation with species-appropriate secondary antibody (Bio-Rad, 1:1000-1:5000). Specific antibody bound bands were developed with Pierce super signal kit Dura West and visualized with an Alpha Innotech Fluorchem imaging system.
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