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31 protocols using ac 15

1

Immunoblotting analysis of Tmp21 and p24

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Hippocampus and cortex were washed in ice-cold PBS and lysed by sonication with RIPA-DOC buffer containing 50 mM TrisHCl (pH 7.2), 150 mMNaCl, 1% deoxycholate, 2–3% Triton X-100, 0.1% SDS and protease inhibitor cocktail Complete (Roche). Protein lysates were diluted in 4XSDS-sample buffer and separated on 12% Tris-glycine SDS-PAGE geland transferred to polyvindylidine fluoride (PVDF-FL) membranes. Membranes were blocked in PBS containing 5% non-fat dried milk and incubated with the primary antibodies diluted in the blocking buffer at 4 °C overnight. Rabbit anti-TMP21 antibody T21 (1:1000) was generated by inoculating rabbit with synthetic peptide HKDLLVTGAYEIHK, this peptide shared 100% sequence homology with both mouse and human TMP21 [30 (link)]. Human p24a was detected by mouse monoclonal antibody TMED2 (1:2000) (C-8) (Santa Cruz Biotechnology). The antibody AC-15 (1:5000) (Abcam, Cambridge, MA, USA and Sigma) was used to detect β-actin. Then the membranes were rinsed in PBS-T and incubated with near-infrared fluorescence-labeled secondary antibodies IRDyeTM680-labeled goat anti-rabbit (1:100,000) and IRDyeTM800-labeled goat anti-mouse antibodies (1:100,000)(Lincoln, NE, USA)in PBS-T at room temperature for 1 h, after further rinsed in PBS-T the membrane was scanned by LI-COR Odyssey R system.
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2

Western Blot Analysis of Leptin Receptor and Caspase-3

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Cellular extracts from cell lines were prepared by dissociation in lysis buffer, and protein was measured using a BCA protein assay kit. Proteins were resolved by SDS-PAGE using the laemmli buffering system with 15% polyacrylamide running gels and 5% stacking gels, and then transferred to reinforced PVDF membranes (Millipore, Bedford, MA, USA). After blocking with 3% skim milk for 1 hour, the membranes were incubated with primary antibodies against leptin-receptor (sc-8391, 1:500, Santa Cruz,) and caspase-3 (H-227) (sc-7148, 1:1,000, Santa Cruz) for 2 hours at room temperature. After washing, the blots were incubated for 45 minutes at room temperature with a horseradish peroxidase (HRP)-conjugated anti-mouse secondary antibody (Abcam, Cambridge, UK). After extensive washing, the antigen-antibody complexes were visualized by exposing the membranes to X-ray film (Fuji, Japan). An antibody against beta-actin antibody (AC -15, 1:10000, Abcam, Cambridge, UK) was used to verify equal loading and transfer of total proteins.
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3

Protein Extraction and Western Blot Analysis

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Total protein in tissues and cells was extracted with RIPA lysis buffer (R0010, Solarbio) containing PMSF. The cells were incubated for 30 min on ice, centrifuged at 12000 r/min, and 4°C for 10 min, and the supernatant was taken. The BCA kit (23225, Pierce) was employed to determine protein concentration of each sample. A 10% SDS-PAGE (P0012A, Beyotime Institute of Biotechnology, Shanghai, China) was adopted to dissolve proteins, which were transferred to a PVDF membrane (ISEQ00010, Millipore, Billerica, MA, USA) by wet transfer. The PVDF membrane was blocked with TBST buffer containing 5% skimmed milk powder for 2 h. The blots were probed with the primary antibody to rabbit KDM6A (1 : 1000, ab36938, Abcam, UK), NOTCH2 (1 : 1000, Ak098372, Abcam, UK), Abcb1a (1 : 1000, ab3373, Abcam, UK), IL-1β (1 : 1000, S328, NIBSC, UK), IL-6 (1 : 1000, Tyr705, Abcam, UK), IL-8 (1 : 1000, S333, Abcam, UK), TNF-α (1 : 1000, C432, PA, USA), Bcl-2 (1 : 1000, ab32124, Abcam, UK), Bax (1 : 1000, 6A7, Abcam, UK), caspase-3 (1 : 1000, H-277, Abcam, UK), and β-actin (1 : 1000, AC15, Abcam, UK). HRP-labeled goat anti-rabbit IgG antibody (Beijing Zhongshan Biotechnology Co., Ltd., Beijing, China, 1 : 5000) was then incubated with cells. The blots were developed with the ECL and quantified with Quantity One v4.6.2 software.
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4

Immunoblotting of PUMA and NOXA Proteins

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Confluent cells were harvested and incubated 1 h at room temperature with lysis buffer (1% Triton, 10% glycerol, 50 mM Tris, 2 mM EDTA and 150 mM NaCl) supplemented with fresh protease inhibitors. After centrifugation, protein concentrations of whole cell extracts were determined by Bradford assay (Bio-Rad, Hercules, CA, USA). Proteins (30 μg) were separated on 15% sodium dodecyl sulphate polyacrylamide gel electrophoresis (SDS-PAGE, Bio-Rad) gel and transferred onto nitrocellulose membrane using the Trans-Blot Turbo Transfer System (Bio-Rad). The membrane was immunoblotted with either rabbit monoclonal anti-PUMA (1:1000, EP512Y, ab33906, Abcam Inc., Cambridge, UK) or mouse monoclonal anti-NOXA (1:250, 114C307.1, MA1-41000, Thermo Fisher Scientific) antibodies. Each primary antibody was diluted in Tris-buffered saline tween 20 (TBS-T) supplemented with 5% fat-free milk powder. β-actin was used as a loading control (AC-15, ab6276, Abcam Inc.). Immunoreactive bands were detected by enhanced chemiluminescence (ECL, GE Healthcare, Little Chalfont, UK). PUMA or NOXA signal quantification (relative to β-actin expression) was performed by Image Lab™ Version 6.0.0 (Bio-Rad).
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5

Protein Extraction and Western Blotting

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Protein extraction and western blotting was performed using standard procedures. In brief, 30 μg protein per sample was separated by Bolt® Bis‐Tris 4–12% SDS/PAGE (Thermo Fisher) and blotted onto polyvinylidene fluoride (PVDF) by iBlot® (Invitrogen, Carlsbad, CA, USA) and blocked by 4% skim milk in 2% Tris‐buffered saline/Tween. Primary antibodies used in this study were as follows: 2A peptide 1 : 2000 ABS31 (Millipore, Billerica, MA, USA), SV40LT 1 : 400 Pab416 (Abcam, Cambridge, UK), and β‐actin 1 : 10 000 AC‐15 (Abcam). Secondary horseradish peroxidase (HRP) antibodies used in this study were as follows: goat anti‐rabbit (AP156P; Millipore) and rabbit anti‐mouse (ab97046; Abcam).
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6

Quantitative AMPK Signaling Pathway Analysis

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Cultured and treated cells were pelleted and washed in cold PBS. Pellets were lysed in Laemmli buffer, separated by SDS-PAGE, and transferred to an Immobilon PVDF membrane (Millipore). Antibodies against AMPK α1 subunit (Abcam, #Y365, 1: 1,000), AMPK (Cell Signaling, #2532, 1:1000), phosphorylated AMPK (Cell Signaling, #2531, 1:1000), p53 (Cell Signaling, #9282, 1:1,000), p21(Abcam, #EPR3993, 1:1,000), ACC (Cell signaling, #3662, 1:1,000), phosphorylated ACC (Cell signaling, #3661, 1:1,000), and actin (Abcam #AC-15, 1:5000 or Abcam #Ab8227, 1:5,000) were used. Relative protein expressions were acquired by ImageJ software and the protein expression of each sample was normalized based on the corresponding α-actin levels.
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7

Immunoblotting Assay for Protein Detection

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For immunoblotting, cells were lysed in RIPA Lysis Buffer (50 mM Tris–HCl, 150 mM NaCl, 0.1% SDS, 1% Sodium Deoxycholate, 1% Triton X-100) supplemented with protease inhibitor (complete ULTRA tablets EASYpack, Roche). The following antibodies were used: anti-Cas9 (Diagenode #C15200216 1:500), anti-p53 (Bioss #bs8687R, 1:1000), anti-Rb1 (Cell Signaling #9313, 1:1000), anti-p130 (SantaCruz Biotech #sc-317, 1:200), anti-β-actin (AC-15, #ab6276, Abcam, 1:2500). For detection, secondary anti-rabbit or anti-mouse IgG-HRP (GE Healthcare, 1:5000) and SuperSignal ECL Kit (ThermoFisher) were used. Anti-β-actin was detected using an Alexa-488 coupled secondary antibody.
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8

Western Blot Analysis of Cellular Proteins

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Cells were lysed in Laemmli buffer(1.6 mL 10% SDS, 500 µL 1 M Tris-HCl [pH 6.8], 800 µL glycerol, 400 2-mercaptoethanol, 4.7 mL H2O), and samples separated by SDS-PAGE before transfer to an Immobilon polyvinylidene difluoride membrane (Millipore). Primary antibodies against p53 (IMX25, 1∶1000; Leica Microsystems), actin (AC-15, 1∶5000; Abcam), anti-pH2AX (#2577, 1∶1000; Cell Signaling Technologies) and a secondary antibody anti-mouse (#7076, 1∶5000; Cell Signaling) or anti-rabbit (#7074, 1∶5000; Cell Signaling) were used. For RR detection, a primary antibody against the M2 subunit of RR (1∶1000; sc-10846, Santa Cruz Biotechnology) was used followed by secondary anti-goat antibody (1∶1000; ab98826, AbCam).
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9

Amsacrine-Induced p53 Activation Analysis

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Splenocytes were isolated from 4 to 6-week-old animals and treated with amsacrine at indicated concentrations or the vehicle control, and incubated in complete RPMI media as indicated. Cell lines were seeded and cultured, treated as indicated and incubated for different times as indicated in the legends to the figures. Protein lysates were prepared in the presence of protease inhibitors, with 20–40 μg of protein separated on NuPAGE 4–12% Bis-Tris Gels (Life Technologies, Carlsbad, CA, USA). Blots were probed with primary antibodies against the N-terminus of p53 (1C12, Cell Signaling Technology, Boston, MA, USA), Phospho-p53 (Ser15) (9284, Cell Signaling), FL393 to detect Δ133p53α, p21 (C-19, Santa Cruz Biotechnology, Santa Cruz, CA, USA) and β-actin (AC-15, Abcam, Cambridge, UK) according to the manufacturers' instructions. Alkaline phosphatase-conjugated antibodies were detected using the Western Breeze Immunodetection kit (Life Technologies). Results were repeated three times per genotype.
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10

Quantitative Immunoblotting Analysis of Viral Proteins

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Immunoblotting was performed as described previously (45 (link), 78 (link)). The following antibodies were used to detect viral proteins: ICP27, mouse monoclonal antibody (MAb) H1113 (Virusys) or H1119 (Rumbaugh-Goodwin Institute); ICP4, mouse MAb H1114 (Rumbaugh-Goodwin Institute for Cancer Research); ICP0, mouse MAb H1112 (Rumbaugh-Goodwin Institute for Cancer Research, ICP22, rabbit polyclonal antibody (a gift from John Blaho), ICP8, mouse MAb H1115 (Rumbaugh-Goodwin Institute for Cancer Research), gD, mouse MAb H1103 (Rumbaugh-Goodwin Institute for Cancer Research); gB, mouse MAb HA-056 (Virusys); VP22, rabbit polyclonal antibody (34 (link)) (a gift from Gill Elliott); and gC: mouse MAb H1104; Rumbaugh-Goodwin Institute). Host cell proteins ALYREF and β-actin were detected using mouse MAbs 11G5 (EMDMillipore) and AC-15 (Abcam), respectively. For the quantitative analysis shown in Fig. 5, cells were infected in biological triplicate and analyzed by immunoblotting. After blotting, filters were cut horizontally and the top portion was probed for ICP4 while the bottom was probed for ALYREF. Digital images of resulting immunoblots were quantitated using ImageJ software. Levels of ICP4 were normalized for cell recovery using the ALYREF loading controls.
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