The largest database of trusted experimental protocols

30 protocols using zyla 4.2 plus

1

TIRF Microscopy Imaging Setup

Check if the same lab product or an alternative is used in the 5 most similar protocols
Fluorescence imaging was carried out on an inverted microscope (Nikon Instruments, Eclipse Ti) with the Perfect Focus System, applying an objective-type TIRF configuration with an oil-immersion objective (Nikon Instruments, Apo SR TIRF ×100, numerical aperture 1.49, Oil). A 561 nm (200 mW, Coherent Sapphire) laser was used for excitation. The laser beam was passed through cleanup filters (Chroma Technology, ZET561/10) and coupled into the microscope objective using a beam splitter (Chroma Technology, ZT561rdc). Fluorescence light was spectrally filtered with an emission filter (Chroma Technology, ET600/50m, and ET575lp) and imaged on a sCMOS camera (Andor, Zyla 4.2 Plus) without further magnification, resulting in an effective pixel size of 130 nm (after 2 × 2 binning).
+ Open protocol
+ Expand
2

Fluorescent Microscopy of Adult C. elegans

Check if the same lab product or an alternative is used in the 5 most similar protocols
Fluorescent microscopy was performed as described previously [21 (link)].On day 1 (20–24 hours post L4 stage), adult animals were immobilized on a 2% agarose pad with a 6 mM levamisole solution in M9. Images were acquired with a 63x/1.4 numerical aperture on a Zeiss microscope (Axio-Observer Z1) equipped with a SpectraX LED light engine (Lumencor). Images were captured with Zyla 4.2 plus (Andor) using the same settings (fluorescence intensity, exposure time, and gain) for a given set of data. A line-scanning method in Metamorph (RRID: SCR_002368) was used to quantify the average fluorescence intensity. In each image, a pixel intensity of 150 pixels was measured, followed by subtraction of background intensity from adjacent 150 pixels.
+ Open protocol
+ Expand
3

Preparation and Visualization of Artificial GVs

Check if the same lab product or an alternative is used in the 5 most similar protocols
GV dispersions were prepared in a manner of “General protocol for preparation of GV-based artificial cells” as mentioned above. A GV dispersion with a 12-h starvation time after the PCR was named pre-budding (BD). Other GV dispersions with a 48-h starvation time after PCR were named pre-multiple tubulation (MT). At 12 h, after the prepared dispersion of GV (lipids concentration; 2.5 mM) were mixed to an equivolume of the V* solution (2.5 mM), pre-BD and pre-MT were renamed as BD and MT, respectively. Dispersions (13 μL) of different GVs were placed in a frame chamber (9 × 9 mm, 25 μL) on a glass plate, and then mixed under a confocal laser scanning (CLS) microscope. GVs of pre-BD/BD and pre-MT/MT were stained with Texas Red-DHPE (0.1 mol%) and BODIPY-HPC (0.1 mol%), respectively. Microscopy images for capturing the GVs in the mixture dispersion were recorded by using an inverted microscope (Eclipse Ti-E, Nikon Instruments Inc., Tokyo, Japan) equipped with a confocal laser scanner unit (CSU-W1, Yokogawa Electric Corp., Tokyo, Japan) and a sCMOS camera unit (Zyla 4.2 plus, Andor Technology Ltd., Belfast, United Kingdom) with 1024 × 1024 active pixels in two channels: a BODIPY channel (488 nm excitation/500–550 nm emission) and a Texas Red channel (561 nm excitation/544–690 nm emission).
+ Open protocol
+ Expand
4

In vitro Fertilization Assay for 28R/GTA Strain

Check if the same lab product or an alternative is used in the 5 most similar protocols
In vitro fertilization assay was performed as previously reported5 (link). 10 μl of blood from mouse infected with 28R/GTA strain was diluted and incubated in a gametogenesis inducing medium for 15 min or overnight, at 21 °C. The precipitated cells in the medium were recovered after incubation, and observed using a fluorescence microscope (AxioImager M2, Zeiss). The movement of mature male gametes was captured and recorded using a high-sensitivity CCD camera Zyla 4.2 PLUS (Andor).
+ Open protocol
+ Expand
5

Dual-Camera Microscopy System for Fluorescence Imaging and Microsphere Tracking

Check if the same lab product or an alternative is used in the 5 most similar protocols
As shown in Figure 1(c), we installed a CMOS camera (Zyla 4.2 Plus, Andor, USA) for fluorescence imaging and a CMOS camera (DFK 33UX264, Imagingsource, USA) for microsphere tracking on an upright microscope (BX51WI, Olympus, Japan) with a 60x objective lens (NA: 0.7, Olympus, Japan). A white light source was combined with a blue bandpass filter (FL488-10, Thorlabs, USA) to act as an excitation source, and the fluorescence camera was combined with a green bandpass filter (FB530-10, Thorlabs, USA) to receive the fluorescence light from the sample. To capture both images simultaneously, we installed a 50:50 beam splitter (CCM1-BS013, Thorlabs, USA) at the intersection point between the two cameras.
+ Open protocol
+ Expand
6

Characterization of ZnO-DOPC Nanoparticles

Check if the same lab product or an alternative is used in the 5 most similar protocols
The morphology of ZnO and ZnO-DOPC nanoparticles was studied by Field Emission Scanning Electron Microscopy (FESEM, Auriga and Merlin, Karl Zeiss, Oberkochen, Germany). The diluted samples were spotted on a silica wafer and coated by a thin layer of Pt for further imaging. The particle size and Zeta potential of the three samples were determined using the Dynamic Light Scattering (DLS) technique (Zetasizer Nano ZS90, Malvern, Worcestershire, UK), while the crystalline structure was analyzed by X-ray diffraction with a X’Pert diffractometer in configuration θ–2θ Bragg-Brentano using a Cu-Kα radiation (λ = 1.54 Å, 40 kV and 30 mA).
To confirm the formation of the supported lipid bilayer on the surface of ZnO-DOPC nanoparticles, fluorescence co-localization experiments were performed. The DOPC shell was labeled with 1% Bodipy-DHPE lipid by incubating this dye (0.2 µg per mg of lipids) with the dispersed DOPC lipids prior to assembly. ZnO nanoparticles, after amine functionalization using APTMS, were labeled with Atto550-NHS ester dye (2 µg per mg of NPs) overnight under stirring at RT and then washed twice with fresh ethanol. A fully-motorized wide-field inverted microscope Nikon Eclipse TiE (Nikon, Tokyo, Japan), in combination with a high resolution sCMOS camera (Zyla 4.2 Plus from Andor) and an immersion 60× oil objective was used.
+ Open protocol
+ Expand
7

Super-Resolution Microscopy Imaging Protocol

Check if the same lab product or an alternative is used in the 5 most similar protocols
Imaging was carried out using an inverted
microscope (Nikon Instruments, Eclipse Ti2) and the Perfect Focus
System, by applying an objective-type total internal reflection fluorescence
(TIRF) configuration with an oil-immersion objective (Nikon Instruments,
Apo SR TIRF 100×, NA 1.49, oil). A 561 nm laser (MPB Communications
Inc., 500 mW, DPSS-system) was used for excitation and was coupled
into a single-mode fiber. The laser beam was passed through cleanup
filters (Chroma Technology, ZET561/10) and coupled into the microscope
objective using a beam splitter (Chroma Technology, ZT561rdc). Fluorescence
light was spectrally filtered with an emission filter (Chroma Technology,
ET600/50m and ET575lp) and imaged with an sCMOS camera (Andor, Zyla
4.2 Plus) without further magnification, resulting in an effective
pixel size of 130 nm after 2 × 2 binning. Camera readout sensitivity
was set to 16-bit, and readout bandwidth to 540 MHz. Imaging parameters
used in the different experiments are shown in Table S12, and NeNA values are listed in Table S13.
+ Open protocol
+ Expand
8

High-Resolution Fluorescence Imaging Workflow

Check if the same lab product or an alternative is used in the 5 most similar protocols
Microscopic inspection and image acquisition were performed using an Eclipse Ti-E inverted microscope (Nikon) equipped with 40x/(0.95 N.A.) air objective. A LED light source (SOLA SE II, Lumencor) was used for fluorescence excitation. YFP fluorescence was excited with a 470/40 filter, and emission was collected with a T495lpxr dichroic mirror and a 525/50 filter. Propidium iodide fluorescence was excited with a 560/40 filter, and emission was collected with a T585lpxr dichroic mirror and a 630/75 filter (filters and dichroic mirror from Chroma). A motorized encoded scanning stage (Märzhäuser Wetzlar GmbH) was used to collect multiple stage positions. In each well, five xy positions were randomly chosen, and 5 × 5 adjacent fields of view (with a 5% overlap) were scanned. Images were acquired with an SCMOS camera (ZYLA 4.2PLUS, Andor). NIS Elements 5.02 software was used for acquisition and basic image processing.
+ Open protocol
+ Expand
9

High-resolution TIRF Microscopy Imaging

Check if the same lab product or an alternative is used in the 5 most similar protocols
Fluorescence imaging was carried out on an inverted microscope (Nikon Instruments, Eclipse Ti2) with the Perfect Focus System, applying an objective-type TIRF configuration equipped with an oil-immersion objective (Nikon Instruments, Apo SR TIRF 100×, NA 1.49, Oil). A 561 nm and 642 nm laser (MPB Communications Inc., 2 W, DPSS-system) were used for excitation. The laser beams were passed through cleanup filters (Chroma Technology, ZET561/10, ZET 640/10) and coupled into the microscope objective using a beam splitter (Chroma Technology, ZT561rdc, ZT640rdc). Fluorescence light was spectrally filtered with an emission filter (Chroma Technology, ET600/50m and ET700/75m) and imaged on a sCMOS camera (Andor, Zyla 4.2 Plus) without further magnification, resulting in an effective pixel size of 130 nm (after 2×2 binning). Images were acquired choosing a region of interest with the size of 512×512 pixels. More detailed imaging conditions for the respective experiments are shown in Supplementary Table 8.
+ Open protocol
+ Expand
10

Fluorescence Imaging of Bead-labeled Samples

Check if the same lab product or an alternative is used in the 5 most similar protocols
12-well plates were mounted on a stage top without warming (room temperature) during image acquisition. Images were collected using an Eclipse Ti-E inverted epi-fluorescence microscope (Nikon) equipped with a Plan Apo 20x/0.75 NA air objective and the Perfect Focus System for maintenance of focus. An LED light source (SOLA SE II, Lumencor) was used for fluorescence excitation. Rhodamine B-marked fluorescent beads were excited through a 560/40 filter, and emission was collected with a T585lpxr dichroic mirror and 630/75 filter (filter cube #49008, Chroma). Images were acquired with a SCMOS camera (ZYLA 4.2PLUS, Andor Technology, Ltd.) controlled with NIS Elements 5.02 software (Nikon Instruments Inc.). 10 × 10 adjacent fields of views (covering a total area of 2.82 × 2.82 mm) were monitored per each well. Multiple stage positions were collected using a motorized encoded scanning stage (SCANplus IM 130 × 85, Märzhäuse).
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!