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197 protocols using methanol

1

Analysis of Microcystins and Taste/Odor Compounds

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Microcystin standards (MC-LR, MC-RR and MC-YR) with purities ≥95% were purchased from Alexis Biochemicals (Lausen, Switzerland). The stock solution of three MC congeners was prepared in 1 mL of Methanol solution at a concentration of 100 mg/L for each variant, which was kept at −20 °C for later use. The C18 solid phase extraction (SPE) cartridges (500 mg, 6 mL) used in MCs analysis were obtained from Anpel Company (Shanghai, China). The standard compounds GEO, MIB and 2-isobutyl-3-methoxypyrazine (IBMP, as the internal standard) were purchased from Sigma-Aldrich Chemical Co. (St. Louis, MO, USA) with the concentration of 100 mg/L in Methanol, while CYC and ION with purities ≥97% were purchased from Adamas Reagent Co., Ltd. (Basel, Switzerland). The stock solution of 1 mg/L with four target T&O compounds prepared in Methanol was stored in the dark at 4 °C. Sodium chloride (NaCl, Sigma, St. Louis, MO, USA) was added to the samples to enhance the T&O compounds extraction from water.
Methanol, trifluoracetic acid, acetic acid, acetonitrile and acetone were of HPLC grade from Tedia Company (Fairfield, OH, USA). Water used throughout the work was from a Milli-Q water purification system (Millipore, Billerica, MA, USA). All other reagents used were of analytical grade or better.
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2

Phytochemical Profiling and Antioxidant Evaluation

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All reagents, specifically 2,2´-diphenyl-1-picrylhydrazyl (DPPH), 2,2´-azino-bis (3-ethylbenzothiazoline-6-sulfonic acid) diammonium salt (ABTS), and 6-hydroxy-2,5,7,8-tetramethylchroman-2-carboxylic acid (Trolox), were purchased from Sigma–Aldrich (St. Louis, MO, USA). HPLC-grade phenolic standards (protocatechuic acid, (+)-catechin, p-hydroxybenzoic acid, chlorogenic acid, (−)-epicatechin, caffeic acid, p-coumaric acid, ferulic acid, rutin, quercetin, quercetin-3-rhamnoside, cAMP, and cGMP) were also purchased from Sigma–Aldrich (St. Louis, MO, USA). HPLC grade sugar standards (glucose, fructose, and sucrose), ascorbic acid (AA), phloridzin and kaempferol were purchased from Yuanye Biotechnology Ltd. (Shanghai, China). Methanol, acetonitrile and formic acid were purchased from Tedia Company, Inc. (Fairfield, CT, USA). Folin-Ciocalteu reagent and all other chemicals were obtained from Sinopharm Chemical Reagent Co. (Shanghai, China).
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3

HPLC Analysis of Echinacea Extracts

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EE was solubilized in methanol (Tedia) (1 mg/mL), and 10 μL of this sample was analyzed using LaChrom Elite HPLC system (Hitachi, Tokyo, Japan) liquid chromatograph equipped with L2130 pump, auto-sampler L2200, L2300 column oven was set at 25 °C and an L2455 diode array detector (DAD) (Hitachi, Tokyo, Japan). The C-18 column (5 μm, 150 mm × 4.6 mm) was used in combination with an appropriate guard column (4.0 mm × 4.0 mm; 5 μm of particle size) (Merck, Darmstadt, Germany). The analysis was performed at a wavelength fixed at 354 nm. The eluents used were aqueous phosphoric acid (Merck, Darmstadt, Germany) (1%) (solvent A) and acetonitrile (J. T. Baker, Leicestershire, UK) (solvent B). The gradient employed was 90% A and 10% B for 0 min, 70% A and 30% B for 40 min, 50% A and 50% B for 50 min, 90% A and 10% B for 51 min, and 90% A and 10% B for 55 min at a flow rate of 0.6 mL/min. Data acquisition was performed using ExChrom Elite software (version 3.3.2 SP1) (Scientific Software Inc., Santa Clara, CA, USA). The compounds present in the extract were compared according to their UV–Vis spectra (similarity index > 0.99) and retention times with commercial standards, as previously described [44 ].
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4

Isolation and Characterization of Artocarpus Phytochemicals

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A total of 15 PFs (PFs 1–15) were isolated from Artocarpus plants in our previous studies [17 ,18 ,19 (link),20 ]. Their structures (Figure 1) were unequivocally elucidated by spectroscopic methods, including one-dimensional and two-dimensional nuclear magnetic resonance, high-resolution electrospray ionization mass spectroscopy, and infrared spectroscopy. The purity of these compounds was determined to be higher than 98% by normalizing the peak area using high-performance liquid chromatography (HPLC) equipped with a diode array detector (DAD). Chromatographic-grade acetonitrile (ACN) and methanol were purchased from Tedia Co. Inc. Deionized water was prepared using a Milli-Q water purification system (Millipore, USA).
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5

Extraction and Quantification of Bioactive Compounds

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Acetone, ligroin, sodium chloride (NaCl), sodium dodecyl sulfonate (SDS), octly β-D-glucopyranside (OG), myoglobin and lysozyme were purchased from Sigma (St. Louis, MO). Gramincidin D (from bacillus breris) was purchased from International Lab (USA).
Ketamine was purchased from Alfasan (Woerden, Holland). Methanol, acetonitrile and chloroform were purchased from Tedia (Fairfield, OH). Ketamine-D4 was purchased from Cerilliant (Round Rock, Texas). Petroleum was purchased from Fisher Scientific (Pittsburgh, Pa.). Formic acid was purchased from Fluka (Buchs, Germany). Ethyl acetate was purchased from Acros (Fairlawn, NJ). Ginsenoside Rc was purchased from Shanghai Tauto Biotech (Shanghai, China). The urine sample was collected from a healthy male volunteer. Herbal medicines Fruit of Schisandra sphenanthera (FSS) and Fruit of Schisandra chinensis (FSC) were purchased from pharmacy stores in Hong Kong. Fresh spinach leaves were purchased from a supermarket in Hong Kong. Extracts of spinach leaves, FSS and FSC, were prepared as described previously [38] . TLC plates (Model: Alugram Sil G/UV254) were purchased from Macherey-Nagel (Düren, Germany).
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6

Quantification of Bile Acids Metabolites

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ANIT, carbamazepine, mycophenolic acid, and reference standards for 18 BAs, including CA, glycocholic acid, TCA, CDCA, glycochenodeoxycholic acid, TCDCA, deoxycholic acid, glycodeoxycholic acid, taurodeoxycholic acid, UDCA, glycoursodeoxycholic acid, TUDCA, LCA, glycolithocholic acid, taurolithocholic acid, hyodeoxycholic acid, glycohyodeoxycholic acid, and taurohyodeoxycholic acid were purchased from Sigma-Aldrich (St. Louis, MO, USA). Chromatography-grade acetonitrile was purchased from Merck (Darmstadt, Germany). Water was purified using a MilliQ water system (Millipore, Bedford, MA, USA). Chromatography-grade acetic acid, formic acid, and methanol were provided by Tedia Company (Fairfield, OH, USA).
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7

Comprehensive Metabolic Analysis via UPLC-QTOF

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This study
used the following equipment and reagents: a desktop high-speed refrigerated
centrifuge TGL-20M (Hunan Hexi Instrument Equipment Co., Ltd.), a
visible nitrogen air purge concentrator (Beijing Spot Technology Co.,
Ltd.), an IKA MS3 vortexer (Guangheng Technology Co., Ltd.), distilled
water (Guangzhou Watsons Food & Beverage Co., Ltd.), chromatographically
pure isopropanol (EMD Millipore, USA), methanol (Tedia, USA), dichloromethane
(DIKMA, USA), acetonitrile (EMD Millipore, USA), a Waters ACQUITY
UPLC liquid chromatograph (Waters, USA), a Waters Xevo G2-XS QTOF
time-of-flight mass spectrometer (Waters, USA), and an ACQUITY UPLC
BEH C18 column (2.1 × 100 mm, 1.7 μm) (Waters, America).
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8

Profiling Bioactive Compounds in Ethiopian Coffee

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Green coffee beans, Coffea Arabica, cultivated in Ethiopia, were obtained from El-Orouba Coffee Company, Cairo, Egypt. The geographical origin of the sample and its type was confirmed by the supplier. Gallic acid, chlorogenic acid, caffeic acid, cinnamic acid, ferulic acid, p-coumaric caffeine, HMF, and Folin–Ciocalteu, DPPH (2,2-Diphenyl-1-picryl-hydrazyl), ABTS (2,2-azino-bis(3-ethil-benothiazoline-6-sulfonic acid), TPTZ (2, 4, 6- tripyridyl-s-triazine) and sodium carbonate were purchased from Sigma-Aldrich Chemical Co. Inc. (Louis, USA). HPLC-grade acetonitrile and methanol were purchased from Tedia Company, Inc., Fairfield, OH 45014, USA. Ultrapure water from a Milli-Q system (Millipore, Bedford, MA, USA) was used in all experiments.
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9

Quantitative Analysis of Tryptophan Metabolites

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Acetonitrile (high-performance liquid chromatography (HPLC) grade) and Methanol (HPLC) were purchased from Tedia (Ohio, USA). Formic acid (HPLC) was purchased from Roe Scientific Inc. (Delaware, USA). Distilled water was from Wahaha Group Co., Ltd. (Hangzhou, China). L-kynurenine (purity > 98%), L-tryptophan (purity > 98%), and hippuric acid (purity > 98%) were purchased from Sigma-Aldrich (Missouri, USA). L-phenylalanine (purity > 98%), 2-piperidinone (purity > 98%), and LPC(14:0)sn-1 (purity > 98%) were purchased from Aladdin Reagent Co. Ltd. (Shanghai, China). Rabbit anti-indoleamine 2, 3-dioxygenase 1 (IDO1) polyclonal antibody (13268-1-AP) was purchased from Proteintech Group, Inc. (Hubei, China).
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10

Taxane-resistant Prostate Cancer Cell Lines

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Piperine (PIP, purity >97%) and glibenclamide were obtained from Sigma-Aldrich Chemical Co. (Milwaukee, WI, USA). Docetaxel (DTX, purity >99 %) was purchased from Chongqing Taihao Pharmaceutical Co. Ltd (Chongqing, China). Acetonitrile (Labscan Asia, Thailand) and methanol (TEDIA Co., Inc., USA) were in HPLC grade and used without further purification. Distilled and deionized water was prepared from Millipore Water Purification System (Millipore, Milford, USA). All other reagents were of at least analytical grade.
A taxane-resistant human prostate cancer cell line (PC3-TxR cells) was provided by Department of Medicine, University of Michigan (Ann Arbor, MI, USA). It was established based on the method of Takeda et al. [43 (link)]. The human prostate cancer cell line (PC3 cells) was a gift from Professor Moses S. S. Chow (Center for Advanced Drug Research and Evaluation, College of Pharmacy, Western University of Health Sciences, USA). MDCK cell line transfected with human MDR1 gene (MDCK/MDR1) was a kind gift from Prof. P. Borst (The Netherlands Cancer Institute, Amsterdam, Netherlands).
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