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5 protocols using cu zn sod

1

Quercetin Modulation of Cell Signaling

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Dulbecco’s modified Eagle’s media (DMEM), Dulbecco’s phosphate buffer saline (DPBS), fetal bovine serum (FBS), penicillin–streptomycin, quercetin dihydrate (Qu), 3-(4,5-dimetylthiazol-yl)-diphenyl tetrazolium bromide (MTT), propidium iodide, rhodamine 123, 2,7-dichlorodihydrofluoresceindiacetate (H2DCF-DA), Fluo-3 AM, proteinase K, ribonuclease A, 1,2-bis-(O-aminophenoxy)-ethane-N,N,N’,N’-tetraacetic acid, tetraacetoxymethyl ester (BAPTA-AM), β-nicotinamide adenine dinucleotide reduced disodium salt (β-NADH), ascorbic acid, agarose, dimethyl sulfoxide (DMSO) and anti-β-actin antibody were purchased from Sigma–Aldrich Chemicals (St. Louis, MO). Antibodies against Bcl-2, Bax, Bim, AIF, NF-κB, caspase-3/caspase-8, phospho-MEK, MEK1/2, phospho-ERK, ERK 1/2, phospho-p38, p-38, phospho-JNK, JNK, Nrf-2, catalase, Cu/Zn SOD, PI3K, phospho-Akt, Akt and GAPDH were purchased from Santa Cruz Biotechnology (Santa Cruz Biotechnology, Inc,). FITC Annexin V was purchased from BD Pharmingen. Histone H3 antibody was purchased from Cell Signaling Technology.
Stock solution of quercetin (Qu) was prepared in dimethyl sulfoxide (DMSO) and diluted to the desired final concentration with culture medium just before use. The final DMSO concentration did not exceed 0.1% (v/v).
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2

Quantifying Oxidative Stress Biomarkers

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Commercial antibodies against ADAMTS-13 (Abcam, Cambridge, UK) diluted to 1:100, HMGB1 (Thermo Scientific, USA) diluted to 1:200, GR (Santa Cruz Biotechnology Dallas, TX, USA) diluted to 1:250, Cu/Zn SOD (Santa Cruz Biotechnology Dallas, TX, USA) diluted to 1:400, and 8-hydroxy-2-deoxyguanosine (8-OHdG) (Santa Cruz Biotechnology, Dallas, TX, USA) diluted to 1:500, were used.
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3

Immunoblotting for Antioxidant Enzymes

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Immunoblotting was carried out as previously described [18] (link). Briefly, freshly perfused non-fixed tissues were sonicated in buffered solution containing protease inhibitors (Sigma #P8340, St. Louis, MO). After separation by polyacrylamide gel electrophoresis and transfer to nitrocellulose, membranes were incubated with a 1:1000 dilution one of the following primary antibodies: CuZnSOD (Santa Cruz Biotechnology, CA); MnSOD (Upstate Biotech/Millipore, Billerica, MA) or β-Actin (Sigma, St. Louis, MO). After appropriate secondary antibody staining and washout, images of membranes were acquired by a UVP Bioimaging System (UVP LLC, Upland, CA). All three primary antibodies were utilized on the same membrane by stripping (Thermo Fisher Scientific #21059, Waltham, MA) and re-probing to control for appropriate loading of samples (see Supplementary Fig. 1 for representative uncropped image of complete western blot).
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4

Western Blot Analysis of Autophagy and Antioxidant Proteins

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Cells were lysed and centrifuged at 13,000 g for 15 min at 4°C. The supernatants were collected, and protein concentrations were determined with the BCA Protein Assay Kit (Pierce). Equal amounts of protein samples were applied to sodium dodecyl sulfate polyacrylamide gel electrophoresis (SDS-PAGE) gels, transferred to pure nitrocellulose membranes (PerkinElmer), and blocked with 5% nonfat milk for 2 hours. The membranes were then incubated with the indicated primary antibodies at 4°C overnight. Primary antibodies used in this study were β-actin from Sigma-Aldrich; Atg7, Atg5, Beclin1, and FOXO1 from Cell Signaling Technology; FOXO3 from Sigma-Aldrich; p62, Cu-ZnSOD, MnSOD, and catalase from Santa Cruz Biotechnology; Complex I Ndufs3, Complex I Ndufa9, Complex II subunit 30 kDa Ip, Complex III subunit Core 1, Complex IV Subunit I, and ATP Synthase Subunit Alpha from Invitrogen; and LC3B from Abcam. The membranes were incubated with secondary peroxidase-conjugated antibodies (Jackson ImmunoResearch) at room temperature for 1 h. Chemiluminescent detection was performed by ECL (Pierce). The results were analyzed and quantified by Quantity One Software (Bio-Rad) to obtain the optical density ratio of the target protein to β-actin. One representative result was shown from at least three independent experiments.
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5

Quantitative Protein Expression Analysis

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Total protein was extracted from frozen muscle tissue using the protein extraction kit (Beyotime Biotechnology, Jiangsu, China) according to the manufacturer’s guide. The protein content of lysates was measured with the Pierce BCA protein Assay kit (Thermo, Waltham, MA, USA). Immunoblotting analysis was performed as previously described [29 (link)]. The primary antibodies included PPARGC1A (ab54481, Abcam, Cambridge, MA, USA), Sirt1 (sc-19857, Santa Cruz Biotechnology, CA, USA), CuZn-SOD (sc-271014, Santa Cruz Biotechnology), and β-tubulin (sc-9104, Santa Cruz Biotechnology). The density of bands was quantified using the Gel Doc XR System (Bio-Rad, Hercules, CA, USA) and then normalized to β-tubulin content. The normalized values were used for comparison of the expression of target protein between SE and LE groups.
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