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41 protocols using red blood cell lysing buffer hybri max

1

Isolation of Murine Tumor-Associated Cells

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Mouse cerebral hemispheres bearing tumors, splenocytes, and axillary and cervical lymph nodes were collected. Initial suspensions were obtained using 100-μm cell strainers (Fisher Scientific), which were placed in RPMI 1640 medium (5 mL/sample), gently pipetted up and down, filtered through 40-µm cell strainers (Fisher Scientific), and then were pelleted by centrifugation (350 g for 7 min, RT). Specifically, for the brain tissue, it was digested using the Brain Tumor Dissociation Kit (P) (Miltenyi Biotech) as recommended by the manufacturer. The spleen-derived pellet was resuspended in Red Blood Cell Lysing Buffer Hybri-Max (Sigma-Aldrich) to lyse the red blood cells, according to the manufacturer’s instructions; then, it was brought up to 2 mL/sample with RPMI 1640. The cells from the brains, spleens, and lymph nodes were pelleted by centrifugation at 350 g for 7 minutes at room temperature and finally resuspended in PBS with 1 mM EDTA.
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2

Murine Bone Marrow-Derived Dendritic Cell Generation

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Murine RAW264.7 macrophage cell line (ATCC) was maintained according to ATCC’s recommendations in DMEM-GlutaMAX media containing 10% FBS and penicillin-streptomycin (100 IU/ml and 100 mg/ml). For generation of murine bone marrow-derived dendritic cells, bone marrow cells were sterilely harvested from the tibia and femur, red blood cell lysed using sterile Red Blood Cell Lysing Buffer Hybri-Max (Sigma) and frozen in FBS containing 10% DMSO (Sigma) at −80 °C. Bone marrow cells were thawed, rinsed to remove DMSO and resuspended at a concentration of 5 × 105 cells/mL in culture media RPMI 1640-GlutaMax containing 5% FBS, 50uM 2-mercaptoethanol, penicillin-streptomycin (100 IU/ml and 100 mg/ml) and 20 ng/ml GM-CSF (BioLegend). After day 3, all non-adherent cells were removed, and adherent dendritic cell clusters were cultured in the fresh medium for another 6 days before use. Every other day half of the medium was replaced with fresh culture medium.
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3

Phenotyping Murine B Cell Subsets

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Single cell suspensions of splenocytes were obtained using a 100 μm cell strainer (Thermo Scientific). Red blood cells were removed using Red Blood Cell Lysing Buffer Hybri-Max (Sigma) and by following the manufacturer's instructions. Cells were blocked with CD16/CD32 clone 93 (eBioscience) then stained with the following antibodies from BD, Biolegend or eBiosciences: CD93 BB515 (clone AA4.1), CD43 PE (clone 1B11), IgM PE-Cy7 (clone 11/41), CD5 APC (clone 53-7.3), IgD APC-Cy7 (clone 11-26c.2a), CD19 Pacific Blue (clone 6D5), CD23 BV510 (clone B3B4), CD21 BV605 (clone 7G6). Propidium iodide (Thermo Scientific) labeling excluded dead cells. Fluorescence minus one controls were included to establish gating parameters for CD19+ B cells. Flow cytometric data was acquired on a Fortessa running Diva 7.0 software (BD) and analyzed with FlowJo software (FlowJo).
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4

Tissue Digestion and Cell Isolation

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Resected lymph nodes, spleen, omentum, lung, pancreas, skin, and tumors were minced and digested with a solution containing 0.1 mg/ml DNase I (Sigma), 0.8 mg/ml Collagenase Dispase (Sigma), and 0.2 mg/ml Collagenase P (Sigma) for 30 minutes at 37°C. Every 5 minutes, tissue suspensions were pipetted up-and-down several times. Digested tissues were depleted of red blood cells by Red Blood Cell Lysing Buffer Hybri-Max (Sigma) according to manufactures instructions.
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5

Isolation of Mouse CD8+ T Cells

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Mouse spleens were collected, placed in a 100-μm cell strainer set in petri dishes with RPMI 1640 medium, and then smashed through the cell strainer into the dish. The mixture in the dish was gently pipetted up and down and brought up to 5 ml/spleen. The cells were pelleted by centrifugation at 350 g for 7 minutes at room temperature and then resuspended in Red Blood Cell Lysing Buffer Hybri-Max (Sigma-Aldrich) to lyse the red blood cells, according to the manufacturer’s instructions. Finally, CD8+ T cells were enriched with a Mouse CD8a+ T Cell Isolation Kit (Miltenyi Biotec, Inc.).
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6

Differentiation of Bone Marrow-Derived Macrophages

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Bone marrow from LDLr−/− male mouse femurs was flushed using an L929 conditioned medium as mentioned above. The cellular suspension was centrifuged at 1,000 × g at room temperature, and the supernatant was discarded. Pelleted cells were incubated with 1.0 ml Red Blood Cell Lysing Buffer Hybri-Max (Sigma-Aldrich, R7757, St. Louis, MO) for 3 min at room temperature to lyse red blood cells. Lyses were stopped using 1.0 ml of Dulbecco’s Phosphate Buffered Saline solution (Sigma-Aldrich, D8537). Cells were centrifuged at 1,000 × g at room temperature, and the supernatant was discarded. Then, the bone marrow cells were resuspended in a differentiation medium: 69% (v/v) DMEM, 20% (v/v) L929 conditioned medium, 1% (v/v) Penicillin–Streptomycin Mixture (Lonza, 17-602F, Basel, CH), and 10% (v/v) fetal bovine serum (Vitrocell, 11). Cells were plated in a 100 mm diameter Petri Dish (Nest Biotechnology, 753001, Wuxi, China) and incubated at 37°C and 5% (v/v) CO2 for 7 days for full differentiation, changing half part of the differentiation medium at day 3. Bone marrow-derived macrophages (BMDMs) were carefully detached using 1.5 ml Accutase Cell Detachment solution (Sigma-Aldrich, SCR005), counted in a hemocytometer, and plated in a 24-well plate (Nest Biotechnology, 702001) or 96-well plate (Greiner Bio-one, 655090, Kremsmünster, AT) for further analysis.
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7

Murine Lung Immune Cell Isolation

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Mice were anesthetized i.p. with Ketamine/Xylazine (Patterson
Veterinary) and subsequently injected intravenously with 3 μg of CD45
(30-F11, BioLegend) monoclonal antibodies through the retro-orbital
sinus56 . After 3 min,
the trachea was exposed, cannulated and bronchoalveolar lavage was performed by
infusing three 1 ml washes of cold PBS with 0.12% 2 mm EDTA. Cell differential
counts for BAL were determined by enumerating mononuclear cells, neutrophils,
and eosinophils on cytocentrifuge preparations as previously described57 . Lung lobes were then removed,
minced with scissors and digested at 37 °C for 20 min in digestion buffer
(0.52 U/ml Liberase TM [Roche] and 60 U/ml DNase I [Roche] in RPMI 1640
[Cellgro]). Lung tissue was then strained through a 70-μm filter and
subjected to RBC lysis with Red Blood Cell Lysing Buffer Hybri-Max
(Sigma-Aldrich) to generate a single-cell suspension. Lung leukocyte enrichment
was performed by using a 30% Percoll gradient. Secondary lymphoid organs were
harvested from the same mice as indicated and mechanically dissociated through a
70-μm filter and subjected to RBC lysis to generate a single-cell
suspension.
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8

Isolation of PBMCs from Whole Blood

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PBMCs were isolated as described previously [11 (link)]. Briefly, blood samples were collected into lithium-heparin coated tubes and diluted with equal volumes of phosphate buffered saline (PBS). The diluted mixture was layered over a half of the volume of Lymphoprep (Axis-shield, Oslo, Norway) and was separated by gradient centrifugation at 800 × g for 30 min at RT. Contaminating red blood cells were lysed using commercial Red Blood Cell Lysing Buffer Hybri-Max (Sigma-Aldrich, St. Louis, MO, USA). The PBMCs were then washed twice with PBS prior to resuspension in a complete medium consisting of RPMI-1640 medium (Lonza, Basel, Switzerland) containing 10% (v/v) fetal bovine serum (FBS; Gibco, Grand Island, NY, USA) and 2% (v/v) of the antibiotic-antimycotics formulating solution with penicillin, streptomycin, and amphotericin B (Lonza, Basel, Switzerland).
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9

Isolation of CD8+ T Cells from Spleen and Small Intestine

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For isolation of CD8+ T cells from spleen, spleens were collected and dissociated to yield a cell suspension prior to treatment with Red Blood Cell Lysing Buffer Hybri-Max (Sigma). For isolation of CD8+ T cells from the small intestinal epithelium, Peyer’s patches were removed and the tissue was cut longitudinally and washed of luminal contents. The tissue was then cut into 1 cm pieces that were incubated while shaking in DTE buffer (1 μg/ml dithioerythritol (Thermo Fisher Scientific) in 10% HBSS and 10% HEPES bicarbonate) at 37°C for 30 minutes. Cells within the supernatant were collected and passed through a 44/67% Percoll density gradient to enrich for lymphocytes.
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10

Isolation of Lung and Intestinal Cells

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Lungs were isolated, finely minced, and digested in Roswell Park Memorial Institute (RPMI)-1640 containing 5% fetal bovine serum (FBS), 0.2 mg/ml of Liberase™ TM (Roche), and 0.1 mg/ml of DNase I (Roche) at 37°C. Digested lungs were homogenized with a 5-ml syringe attached to an 18G needle, filtered through a 70 μM cell strainer, and washed with PBS. Red blood cells were lysed using Red Blood Cell Lysing Buffer Hybri-Max™ (Sigma-Aldrich), and cells were washed with fluorescence-activated cell sorting (FACS) buffer (PBS + 2% FBS). Small intestines were isolated, opened longitudinally, cut in small pieces, and vortexed in gut buffer (Hanks’ Balanced Salt Solution (HBSS) + 2% FBS + 15 mM of HEPES) to remove fecal matter. Intestinal epithelial cells were removed by incubation in gut buffer containing 5 mM of EDTA for 20 min. Lamina propria was subsequently digested in RPMI-1640 supplemented with 5% FBS, 15 mM of HEPES, 0.1 mg/ml of Liberase™ TM (Roche), and 0.1 mg/ml of DNase I (Roche) at 37°C for 15 min. Digestion suspensions were filtered through a 70 μM cell strainer to obtain a single-cell suspension, and cells were washed with FACS buffer.
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