The largest database of trusted experimental protocols

18 protocols using moflo xdp

1

Purification of Naïve and Treg CD4+ T Cells

Check if the same lab product or an alternative is used in the 5 most similar protocols
Bulk CD4+ T cells were purified from the spleen and mLN by negative selection as previously described (Coccia et al., 2012 (link)). Naïve CD4+ T cells were then sorted as CD4+ CD25- CD44- CD62L+. Treg cells were sorted as CD4+ CD25+ when sorted from Atg16l1ΔCD4 and Atg16l1fl/fl mice and as CD4+ YFP+ when sorted from Atg16l1ΔFoxp3 and Foxp3Cre mice. Cells were sorted using an Astrios, Beckman Coulter MoFlo XDP or AriaIII BD Bioscience. Post-sort flow cytometry analyses confirmed that the purity of sorted populations was >97%.
+ Open protocol
+ Expand
2

Intracellular Arsenic Measurement

Check if the same lab product or an alternative is used in the 5 most similar protocols
K562 cells were incubated with or without ee-As4S4 for different time. After incubation, viable single cells were collected by a MoFlo XDP flow sorter (BD Biosciences, San Jose, CA, USA). The arsenic content in the collected cells was measured using hydride generation atomic fluorescence spectrometry (AFS-8230 HG-AFS, Beijing Titan Instrument Co. Ltd., Beijing, China).
+ Open protocol
+ Expand
3

Engineered Jurkat Cell Lines for Immunotherapy

Check if the same lab product or an alternative is used in the 5 most similar protocols
Jurkat cells (acute T cell leukaemic cell line from ATCC) were modified to express CD3+CD7+ CD3+CD7, CD3CD7+ and CD3CD7 by SpCas9 mRNA-based disruption of TCR and/or CD7 using TRBC sgRNA and CD7 sgRNA and maintained in culture in RPMI-1640 (Thermo Fisher Scientific) supplemented with 10% FBS (Millipore Sigma) (Supplementary Fig. 9). For in vivo experiments cells were stably transduced with a 3rd generation pCCL-PGK-EGFP-LUC lentiviral vector and were sorted on a MoFlo XDP (BD) for GFP expression prior to banking.
+ Open protocol
+ Expand
4

Flow Cytometry Analysis of SC-β and ANGI Cells

Check if the same lab product or an alternative is used in the 5 most similar protocols
Flow cytometry analysis of differentiation efficiencies was performed using the LSRII flow cytometer by BD. FACS purification of pre- and post-transplant SC-β cells was performed using a combination of MoFlo Astrios, MoFlo XDP, and BD FASCARIA III sorting instruments. Cells were first gated on side and forward scatter profiles followed by gating on GFP-positive cells and subsequent TSQ (405 nm)-positive PI-negative populations following the protocol (Davis et al., 2019 (link)). Cells were sorted into stage 6 medium and centrifuged/washed before lysis in TriZOL RNA reagent for extraction using trizol/chloroform extraction.
Flow cytometry for ANGIs differentiations were performed using the Attune NXT and sorted using the above-mentioned instruments. Gating strategies for ANGIs analysis was to first plot mCherry vs violet or empty channel to identify single positive cells and the mCherry+ subset was then plotted for eGFP vs empty channel or violet. Flow cytometry staining for ANGIs used the above antibodies as well as antibodies against endocrine hormones SST, PPY, GHRL in the far-red channel. These experiments included antibodies to mCherry and eGFP to enhance signal after fixation.
+ Open protocol
+ Expand
5

Multicolor Flow Cytometry Analysis

Check if the same lab product or an alternative is used in the 5 most similar protocols
Flow cytometry was performed using a BD Fortessa analyser with subsequent data analysis using FlowJo 7.6.5 software. Cell sorting was performed using a MoFlo XDP (BD) cell sorter. mCherry, Green fluorescent protein (GFP) and blue fluorescent protein (BFP) were excited using 561 nm, 488 nm and 405 nm laser and detected using a 610/20, 530/30 and 440/40 filter.
+ Open protocol
+ Expand
6

Murine Malaria Infection Monitoring

Check if the same lab product or an alternative is used in the 5 most similar protocols
Malaria: Mice (male) housed under reverse light were infected intraperitoneally with 105Plasmodim chabaudi chabaudi AS infected red blood cells (RBC). Blood smears were taken daily (am) when parasite sequestration is low in order to best estimate the level of parasitemia, the proportion of parasitized RBCs were monitored as described previously51 (link). Measurements of clinical pathology, body weight and temperature (measured using a non-invasive thermometer, Fluke), were also taken daily (pm) and calculated relative to the day 0 baseline. For RNA-seq and ATAC-seq, T cells were enriched by negative selection from individual spleens (3 mice each Maffl/fl and Maffl/flCd4-cre) on day 7 post infection as described above and Ter119-CD3+CD4+ T cells (Ter119 (TER-119) APCCy7, BD; CD3 (145-2C11) APC, CD4 (RM4-5) e450, eBioscience) were sorted on MoFlo™ XDP or BD Fusion cytometer.
+ Open protocol
+ Expand
7

Immunophenotyping mouse hematopoietic cells

Check if the same lab product or an alternative is used in the 5 most similar protocols
Single-cell suspensions were incubated with purified anti-CD16/32 (clone 93) for 10 min on ice to block Fc receptors. Fluorochrome- or biotin-labeled monoclonal antibodies (clones denoted in parentheses) against B220 (RA3-6B2), CD19 (1D3), CD3ɛ (145-2C11), CD4 (RM4-5), CD8 α (53–6.7), TCRβ (B20.6), NK1.1 (PK136), CD11b (M1/70), Gr1 (RB6-8C5), Ter119 (TER-119), Sca1 (D7), c-kit (2B8), CD48 (HM48-1), CD150 (TC15-12 F 12.2), CD34 (RAM34), and Flt3 (A2F10) were purchased from BD Biosciences, BioLegend or eBioscience. Cells were stained with antibodies on ice for 20 min before washing. Cells were run on a Fortessa (BD Biosciences) or MoFlo XDP (BD Biosciences) and analyzed by Flowjo (Tree Star). For HSC sorting, Lin cells were enriched by Lineage Cell Depletion Kit (Miltenyi Biotec) before antibody staining.
+ Open protocol
+ Expand
8

Murine Malaria Infection Monitoring

Check if the same lab product or an alternative is used in the 5 most similar protocols
Malaria: Mice (male) housed under reverse light were infected intraperitoneally with 105Plasmodim chabaudi chabaudi AS infected red blood cells (RBC). Blood smears were taken daily (am) when parasite sequestration is low in order to best estimate the level of parasitemia, the proportion of parasitized RBCs were monitored as described previously51 (link). Measurements of clinical pathology, body weight and temperature (measured using a non-invasive thermometer, Fluke), were also taken daily (pm) and calculated relative to the day 0 baseline. For RNA-seq and ATAC-seq, T cells were enriched by negative selection from individual spleens (3 mice each Maffl/fl and Maffl/flCd4-cre) on day 7 post infection as described above and Ter119-CD3+CD4+ T cells (Ter119 (TER-119) APCCy7, BD; CD3 (145-2C11) APC, CD4 (RM4-5) e450, eBioscience) were sorted on MoFlo™ XDP or BD Fusion cytometer.
+ Open protocol
+ Expand
9

GFP-Driven Cell Sorting and Analysis

Check if the same lab product or an alternative is used in the 5 most similar protocols
GFP was used as a reporter gene for transfected cells, and positive cells were sorted using a Beckman Coulter MoFlo XDP or a BD FACSVantage Diva system. The sorted cells were used for RT-qPCR, Western blotting, and cell-cycle analysis [propidium iodide (PI)/BrdU] as described in Supporting Information.
+ Open protocol
+ Expand
10

Profiling Antigen-Specific CD8+ T cells

Check if the same lab product or an alternative is used in the 5 most similar protocols
Antigen-specific CD8+ T cells were sorted based on MART-1 tetramer expression using the MoFlo XDP (BD Biosciences). Total genomic DNA was isolated with the DNeasy Blood and Tissue Kit (Qiagen, Venlo, the Netherlands). The DNA was used for deep sequencing of the β-chain, using the ImmunoSEQ platform (Adaptive Biotechnologies, Seattle, WA, USA). Details of the deep sequencing assay are as follows: the TCRβ and TCRγ CD3 region was amplified and sequenced using the ImmunoSEQ assay (Adaptive Biotechnologies, Seattle, WA). Specifically, CD8+ T cells from patients were either sequenced pre-expansion or expanded for MART-1 antigen using DCs or nano-aAPC, before sorting for MART-1 tetramer positive cells, and then sequenced. Diversity metrics, clone distribution, and Vβ gene usages were examined both pre- and post-expansion for each patient. The diversity metrics that we examined were: productive entropy, which is Shannon’s Entropy ( H=pilog2pi where pi is the frequency of a given clone) for all productive rearrangements within a sample, with larger numbers representing greater diversity; and productive clonality ( C=1Hlog2N where H is productive entropy and N is the number of unique CDR3 clones) which ranges from 0 to 1 with lower values representing greater diversity.
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!