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6 protocols using neutralizing antibodies

1

Th1 and Th17 cell differentiation

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CD4+ T cells from C57BL/6 mice were cultured in Iscove’s modified Dulbecco’s medium with KnockOut Serum Replacement (both from Invitrogen) for 5 days in the presence of TH1 [IL-12 (12 ng/ml) and anti–IL-4 (10 μg/ml)] or TH17 [TGF-β (3 ng/ml), IL-6 (30 ng/ml), IL-1β (10 ng/ml), IL-23 (10 ng/ml), anti–IL-4 (10 μg/ml), and anti–IFN-γ (10 μg/ml)] conditions and anti-mouse CD3 (1.0 μg/ml; clone 145-2C11, eBioscience) and anti-mouse CD28 (0.5 μg/ml; clone 37.51, eBioscience). Mouse BALB/cAnNcrl CD4+ T cells were cultured in TH2 [IL-4 (40 ng/ml) and anti–IFN-γ (10 μg/ml)] conditions in RPMI 1640. Neutralizing antibodies were supplied from BioLegend. All cytokines were supplied by PeproTech, except IL-23 (R&D Systems). All mice were obtained from Harlan UK. Secreted cytokines were measured using the MSD platform according to the manufacturer’s instructions.
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2

Naïve CD4+ T Cell Polarization

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Naïve CD4+CD25-CD62L+ T cells were isolated from spleen and lymph nodes using FACS Aria (BD bioscience, San Jose, CA, USA). PerCPCy5.5-conjugated anti-CD4 (GK1.5), fluorescein isothiocyanate (FITC)-conjugated anti-CD25 (7D4), phycoerythrin (PE)-conjugated anti-CD62L (MEL-14) were purchased from Biolegend. The naïve T cells were cultured in DMEM (Wako, Osaka, Japan) supplemented with 10% fetal bovine serum (Biowest, Nuaillè, France) and penicillin G and streptomycin. Naïve T cells were activated with anti-CD3/CD28 beads (Life Technologies, Oslo, Norway), anti-IL-4 (10 μg/mL) (Biolegend), and anti-IFNγ (10 μg/mL) neutralizing antibodies (Biolegend) and were polarized with cytokines to generate Treg (TGF-β: 0.125 or 0.5 ng/mL, Peprotech, Inc, Rocky Hill, NJ, USA) or Th17 (TGF-β: 2 ng/mL and IL-6: 100 ng/mL, Peprotech, Inc) in the presence or absence of LRG. Cells were harvested on day 3 for analysis.
For determination of the differentiation of CD4+ T cells, inguinal lymphoid cells were isolated on day 27, and cultured in the presence of type-2 collagen (Chondrex,Inc. Redmond, WA, USA) for 3 days. Then, T cell subsets were analyzed by flow cytometry.
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3

Cell Proliferation Assay for Drug Screening

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Briefly, 1 × 104 cells were plated into 96-well plate for 24 h and serum-starved for additional 24 h, before treated with complete media, control media (media containing 1% FBS) or fibroblast conditioned media (1.0 μg/μl) with or without chemicals, recombinant proteins or neutralizing antibodies (BioLegend, CA, USA) for subsequent 24-72 h. At the end of treatment, MTT solution (5 mg/ml) was added into each well, followed by 4 h incubation at 37°C. The formazan crystals were dissolved with sodium dodecyl sulfate before reading the absorbance using CHAMELEON™V plate reader (Hidex, Finland) at 570 nm with reference wavelength of 630 nm.
To measure cell proliferation, we determined BrdU incorporation into the cellular DNA using an ELISA-based approach (Cell Signaling Technology, MA, USA). Cells were seeded and treated as described above, and at the end of treatment, BrdU solution was added for 24 h. Following fixation and denaturation, the cells were labeled with antibodies and washed before added with TMB substrate. Color development was terminated with a STOP solution, and measured at 450 nm using CHAMELEON™V plate reader. In addition, the cells were also stained with 0.04% trypan blue to count for number of viable cells, using neubauer improved hemocytometer (Sigma Aldrich).
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4

Real-Time Killing Assays for CD8+ T Cells

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Real‐time killing assays were carried out as described previously (Kummerow et al., 2014 (link)). P815 and EL4 target cells were loaded with 500 nM calcein‐AM in AIM V medium containing 10 mM HEPES for 15 min at room temperature. Cells were washed once and settled into black 96‐well plates with clear‐bottom (Corning®) at a density of 2.5 × 104 cells/well. CD8+ T cells were pulsed with 2 μg/ml anti‐CD3ε antibody (Biolegend) and gently added onto target cells at the indicated effector‐to‐target ratio. To block NKG2D‐ and FasL‐mediated cytotoxicity, CD8+ T cells were treated with 10 and 20 μg/ml neutralizing antibodies (Biolegend). Target cell lysis was measured with a GENios Pro plate reader (Tecan) every 10 min for 4 h at 37°C using bottom reading mode and analyzed as described before (Kummerow et al., 2014 (link)).
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5

Neutralizing Antibodies Modulate Cell Viability

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Cells were seeded in 24-well flat-bottom cell culture
plates at a
density of 1–2 × 105 cells/well. After incubation
overnight, cells were pretreatment (1 h) of neutralizing antibodies
(2 μg/mL) against TNFα (Biolegend, San Diego CA), TRAIL
(Biolegend), or FasL/CD95 (Biolegend) prior to treatments with Smac
mimetics. Cell viability was determined as previously described. Each
graphical representation indicates the mean ± SD of at least
three independent testing conditions.
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6

Inducing T Cell Subset Polarization

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To induce TH1 or TH2 effector subset polarization, primary T cells were stimulated directly ex vivo on anti-CD3 (1 μg/ml) and anti-CD28 (1 μg/ml) coated plates, as described above, with either TH1 (5 ng/ml IL-12 and 20 μg/ml anti-IL-4 (11B11), or TH2 (10 ng/ml rmIL-4 and 20 μg/ml anti-IFNγ) differentiation cocktails (66 (link)). On day 2, 5 U/ml rmIL-2 was added to all cultures. The exogenous cytokines were obtained from Peprotech, (Rocky Hill, NJ) and neutralizing antibodies were purchased from Biolegend. Cells were removed from Ab-coated plates on day 4. Polarization was confirmed through flow cytometry analysis of transcription factor and cytokine staining for GATA-3, T-Bet, IL-4 and IFNγ. Immediately prior to use in the trogocytosis assay, >95% of CD4+ blasts generated under TH1-polarizing conditions were T-bet+, and >60% of CD4+ blasts generated under TH2-polarizing conditions were GATA-3+.
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