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14 protocols using facs aria high speed cell sorter

1

Mitochondrial Mass Quantification by Flow Cytometry

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AH375 cells grown adherent or in suspension (tumor spheres) were trypsinized and stained with MitoTracker Green (Thermo Fisher) at 1/7,500 for 10 min at 37°C in PBS‐EDTA 5 mM with 2% fetal calf serum. Cells were centrifuged and washed twice with 10 volumes of PBS‐EDTA 5 mM with 2% fetal calf serum. Flow cytometry analysis was performed on a Canto II flow cytometer. MitoTracker Green fluorescence was detected in the GFP channel, gated on PI (propidium iodide) negative single cells. Cell sorting was performed at IRIC cytometry platform on a BD FACSAria high‐speed cell sorter.
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2

Evaluating CD8+ and CD103+ Dendritic Cells in Tumor Immunotherapy

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B6 mice (f, 6–8 wks, 10 per group) were injected subcutaneously (s.c.) in the left flank with GL26 (1x106) tumor cells on day 0. On day 8, tumor-bearing mice were left untreated or they were vaccinated using a GG with XBP1/TRP2hsp70 DNA as previously described (23 (link)). After 3 days, single-cell suspensions of pooled skin/tumor dLN were incubated with anti-CD16/32 (BD Biosciences) on ice for 15 minutes before being stained using anti-CD11c-APC, -CD8α-pacific blue, -CD205-percep-cy5.5, -CD103-PE, and CD11b-FITC Ab (BD Biosciences, eBioscience, Biolegend). CD8α+DC (CD11chiCD8α+CD205+) and CD103+DC (CD11chiCD8αCD103+CD11blo/−) were then sorted using a BD FACSAria High Speed Cell Sorter (BD Biosciences). Sorted CD8α+DC or CD103+DC (2x104) were co-cultured with TRP2-specific CD8+T cells (1x105, provided kindly by Dr. Hurwitz at NCI) isolated from murine TRP2180–188 TCR transgenic (Tg) B6 mice (28 (link)) in 200 μl RPMI1640 containing 10% (v/v) FBS for 3 days. IFN-γ in the culture supernatants was measured by ELISA (BD Biosciences).
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3

Characterization of CSC Markers in Cancer

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CSC markers were evaluated by multi-color flow cytometric analysis (FACS) on a BD FACS LSRII (BD Biosciences, San Jose, CA, USA), after cell staining with 0.5 μg per 100 μl of anti-CD24-Pacific Blue (eBioscience, San Diego, CA, USA) and anti-CD44-Alexafluor 700 (Biolegend, San Diego, CA, USA), 0.5 μg per 100 μl of anti-human-CD133-AF700 (MACS, Auburn, CA, USA) or ALDEFLUOR reagent (0.5 μg per 100 μl; Stem Cell Technologies, Vancouver, BC, CA). Data are represented as mean±s.d. *P<0.05; **P<0.01 were calculated by two-tailed Student's t-test (n=6; replicated 2 ×). CD24low/CD24high sub-populations of NCI-H292 cells were sorted utilizing anti-CD24-Pacific Blue antibody, using a BD FACSAria high-speed cell sorter (BD Biosciences). Similarly, CD133+ cells were sorted and collected in high fetal bovine serum (20%)-containing RPMI-1640 cell media (Gibco, Grand Island, NY) supplemented with 5% penicillin/streptomycin. Cells were centrifuged, washed 2 × with 1 × PBS, and resuspended in StemPro mesenchymal stem cell growth media supplemented with StemPro MSC SFM supplement (Gibco) and placed in ultra-low attachment plates (Corning) and monitored over the course of 7 days.
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4

Mouse Epidermal Cell Sorting

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Whole dorsal and ventral mouse skin were excised and floated on trypsin (0.25%) for 1 h at 37° or overnight at 4°. The epidermis was separated from dermis by scraping and epidermal cells were mechanically dissociated using a pipette. Epidermal cells were filtered with a 70 μM cell strainer into 20% BCS, collected at 300g and washed twice with PBS. The cells were then filtered through a 40 μM cell strainer and stained for FACS processing with CD34 Monoclonal Antibody (RAM34), FITC, eBioscience (Catalog #:11-0341-82) and CD49d (Integrin alpha 4) Monoclonal Antibody (R1-2), PE, eBioscience (Catalog #:12-0492-81). Gating strategy shown in Suppl Fig 1b. Cells sorted using BD FACSAria high-speed cell sorters. Single positive and double positive populations were collected into 20% BCS, RIPA lysis buffer (Thermo Scientific, Pierce), or 80% methanol for enzymatic assays, western blots or mass spec analyses respectively.
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5

Mouse Epidermal Cell Sorting

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Whole dorsal and ventral mouse skin were excised and floated on trypsin (0.25%) for 1 h at 37° or overnight at 4°. The epidermis was separated from dermis by scraping and epidermal cells were mechanically dissociated using a pipette. Epidermal cells were filtered with a 70 μM cell strainer into 20% BCS, collected at 300g and washed twice with PBS. The cells were then filtered through a 40 μM cell strainer and stained for FACS processing with CD34 Monoclonal Antibody (RAM34), FITC, eBioscience (Catalog #:11-0341-82) and CD49d (Integrin alpha 4) Monoclonal Antibody (R1-2), PE, eBioscience (Catalog #:12-0492-81). Gating strategy shown in Suppl Fig 1b. Cells sorted using BD FACSAria high-speed cell sorters. Single positive and double positive populations were collected into 20% BCS, RIPA lysis buffer (Thermo Scientific, Pierce), or 80% methanol for enzymatic assays, western blots or mass spec analyses respectively.
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6

Stable Cell Lines for MDR1/P-glycoprotein Study

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Cell lines stably expressing WT, K433M, K1076M, and K433M/K1076M double mutant MDR1/P-glycoprotein were established by the Sleeping Beauty (SB) transposon-based gene delivery system, using the 100 fold hyperactive SB transposase68 (link). NIH 3T3 mouse fibroblast and MDCK II canine kidney cells were co-transfected with the SB transposase and SB transposon vector constructs by Lipofectamine2000 reagent (Life Technologies, Carlsbad, CA, USA), in accordance with the manufacturer’s instructions. Briefly, 3 × 105 cells were seeded in 6-well-plates, 24 hours later cells were transfected with 2 μg vector DNA per well in a 10:1 ratio for the SB transposon and transposase constructs. 48 hours after transfection transgene positive cells were sorted by flow cytometry (FACS Aria High Speed Cell Sorter, Becton Dickinson) based on the cell surface expression of wild-type and mutant MDR1/P-glycoprotein. Protein expression was measured by antibody labeling using the human MDR1/P-glycoprotein specific monoclonal antibodies MRK16 (Abnova GmbH, Heidelberg, Germany) or 15D3. To obtain homogenously expressing cell populations, sorting procedure was repeated 2 weeks after transfection.
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7

Isolation and Culture of Cardiomyocytes and Cardiac Stem Cells

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Cardiomyocytes from newborn rats was prepared by collagenase II digestion and cultured in DMEM/M199 medium with 10% FBS, 100 U/mL of penicillin, 100 μg/mL of streptomycin and 0.1 mM of Brdu (Sigma, St. Louis, MO, USA). C-kit(+) CSCs were purified by staining with PE-conjugated anti-c-kit monoclonal (#553355, BD) and sorting with a FACS Aria high-speed cell sorter (Becton Dickinson, San Jose, CA, USA), cultured in DMEM-Ham’s F-12 containing 10 ng/mL of EGF (PeproTech, Princeton, NJ, USA), 20 ng/mL of bFGF (PeproTech), 10 ng/mL of LIF (PeproTech), 10% of ES-cell qualified FBS (Gibco, Carlsbad, CA, USA), penicillin (100 U/mL) and streptomycin (100 μg/mL). The cardio fibroblasts were removed from cardiomyocytes through differential adhesion.
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8

Establishment of Stable EGFP-Expressing Cell Lines

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HeLa cell lines were maintained in Dulbecco’s modified Eagle’s medium (DMEM, cat. #31966047) supplemented with 10% of fetal bovine serum (cat. #10500064), 1% of L-glutamine (cat. #25030081), and 1% of penicillin/streptomycin (cat. # 15070063, all from Thermofisher Scientific) using standard cell culture methodology. Cells were transfected with FuGENE® HD reagent (Roche Applied Science, Penzberg, Germany) in a 6-well or 24-well plate, according to the manufacturer’s instruction. To stain the cell nuclei, 10 μM of the Hoechst 33342 dye was used according to the standard protocol. EGFP and Hoechst fluorescence was detected by an IX51 fluorescence microscope (Olympus, Shinjuku City, Tokyo, Japan).
To establish cell lines stably expressing EGFPm-mirtron constructs, we applied the Sleeping Beauty transposon-based gene delivery technology as described earlier [51 (link)]. Following transfection, cells were sorted for EGFP positivity at day 8 and subsequently at day 15 using a FACS Aria High Speed Cell Sorter (Beckton-Dickinson, Franklin Lake, NJ, USA) to obtain homogenously expressing cell populations. Stable expression was also checked by subsequent FACS analyses. The established cell lines were further used for mRNA level and western blot experiments.
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9

Quantifying CD133+/CD44+ Prostate Cancer Cells

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Control PCa cells (PC3Control or DU145Control) or GAS6 overexpressed PCa cells (PC3GAS6OE or DU145GAS6OE) (1 × 105) were seeded onto 12-well culture plates, and then cultured for 48 hours. PCa cells were incubated with PE-anti-CD133 antibody (cat. 130-080-901, Miltenyi Biotec, San Diego, CA) and APC-anti-CD44 antibody (cat. 559942, BD Biosciences, San Jose, CA) for 20 min at 4°C. The CD133+/CD44+ fraction was analyzed with a FACS Aria High-Speed Cell Sorter (BD Biosciences).
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10

Sorting of Memory T Cell Subsets

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Pre-Th1 and pre-Th2 CD25 memory and CD25+CD127hi memory cells were identified using the antibodies described in the section above. The 4 cell populations were sorted on a BD FACSAria high-speed cell sorter. Gates used to sort cell subsets are shown in Supplemental Figure 4.
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