The largest database of trusted experimental protocols

6 protocols using image gauge software version 4

1

Western Blot Analysis of Mouse Tissue Proteins

Check if the same lab product or an alternative is used in the 5 most similar protocols
We homogenized mouse tissues in buffer containing 50 mM Tris–HCl (pH 8.0), 150 mM NaCl, 1% Nonidet P‐40, 0.5% deoxycholate, 0.1% SDS, and 1 mM 2‐mercaptoethanol with Halt Protease Inhibitor Cocktail (Thermo Fisher Scientific, NJ, USA) and then centrifuged them at 2,500 × g for 15 min. Equal amounts of protein were separated by 5–20% SDS–PAGE and transferred to Hybond‐P membranes (GE Healthcare, Piscataway, NJ, USA). The primary antibodies and their dilutions were as follows: AR (N20, 1:1,000; Santa Cruz Biotechnology, Santa Cruz, CA, USA), Dnmt1 (1:1,000; Abcam, Cambridge, MA, USA), Dnmt3a (1:1,000; Abcam), Dnmt3b (1:1,000; Abcam), Hes5 (1:1,000; Santa Cruz), and ChAT (1:1,000; Millipore, Billerica, MA, USA). Primary antibody binding was probed with horseradish peroxidase‐conjugated secondary antibodies at a dilution of 1:5,000, and bands were detected by using an immunoreaction enhancing solution (Can Get Signal; Toyobo, Osaka, Japan) and enhanced chemiluminescence (ECL Prime; GE Healthcare). An LAS‐3000 imaging system (Fujifilm, Tokyo, Japan) was used to produce digital images. The signal intensities of these independent blots were quantified using IMAGE GAUGE software version 4.22 (Fuji) and expressed in arbitrary units (n = 3 for each group). The membranes were reprobed, or the same samples were examined with an anti‐GAPDH (1:5,000; Santa Cruz) antibody for normalization.
+ Open protocol
+ Expand
2

Quantitative Immunoblotting Protocol

Check if the same lab product or an alternative is used in the 5 most similar protocols
We performed immunoblots as previously described (65 (link)). See table S6 for a list of antibodies. GAPDH serves as a loading control. An LAS3000 imaging system (Fujifilm) was used to produce digital images. The signal intensities of these independent blots were quantified using Image Gauge Software version 4.22 (Fujifilm) and expressed in arbitrary units.
+ Open protocol
+ Expand
3

Quantifying ERK5 Kinase Activity

Check if the same lab product or an alternative is used in the 5 most similar protocols
In vitro ERK5 kinase activity was measured as we described previously (22 (link)). For each reaction, 1 μg of purified GST-MEF2C-GST fusion protein on beads and 0.5 μg of GST-ERK5 fusion protein were added to 30 μL of reaction buffer (10 mM MgCl2, 10 mM MnCl2 and 25 mM HEPES, pH7.5). Different doses of pitavastatin were added to the mixture, and reactions were allowed to take place for 30 min at 30 °C in the dark with vigorous shaking. Cold ATP (final concentration 1 mM) and 1 μCi of γ-32P-ATP were added to the reaction mixture, which was then gently mixed and further incubated as before for 30 min. Finally, 6X sample buffer was added to terminate the reaction. The samples were boiled, electrophoresed on SDS-polyacrylamide gels and transferred to polyvinilidene difluoride membranes. The film exposed to the membrane was developed. MEF2C phosphorylation was quantified using Fujifilm Image Gauge software (Version 4.0). Amounts of GST-MEF2C fusion protein used in each sample were visualized by Poncreau S staining. Amounts of recombinant GST-ERK5 fusion protein used in each sample were detected by Western blotting using anti-ERK5 antibody.
+ Open protocol
+ Expand
4

Telomere Length Measurement by TRF Analysis

Check if the same lab product or an alternative is used in the 5 most similar protocols
Measurement of telomere length by TRF analysis [20 (link)] was performed as described previously [52 (link)]. Briefly, 3–5 μg of tumor genomic DNA were digested with RsaI and HinfI and separated in a 0.9% agarose gel prior to transfer and hybridization with a (TTAGGG)332P-labeled telomeric probe. Telomere tracts appear as a broad band or “smear”, which represents the average length of most chromosomes. The smear is very heterogeneous because telomere length not only varies between chromosome ends, but also between cells. Results were analyzed using a GE Storm phosphorimager and the ImageGauge software version 4.0 (Fujifilm, Denver, CO, USA).
+ Open protocol
+ Expand
5

Quantification of Replication Signals

Check if the same lab product or an alternative is used in the 5 most similar protocols
Quantification of the random termination signal (triangular smear) and the pause signal was performed using the Quant option of Image Gauge software version 4.0 (Fujifilm). Quantification in all these cases was done on the raw unprocessed image using the Phosphorimager Image Quant software taking care that the signals are not saturated. For quantitation of RI signals, the signal from 1n spot (unsaturated) is compared with the RI signal of the particular RI type. In each case the area is drawn manually and kept constant for background deduction of all comparisons. For example, the stalled-fork signal area is identical for the wild-type and CENP-A-depleted cells (6 h & 8 h) (Figure 3B). Same is the case with the termination signal. Experiments are repeated and precautions, as much as possible with 2D gels, have been taken to avoid variability. Quantitation is an average of at least two independent DNA preparations. Relative intensity of termination (RIT) was calculated as followed: RIT = normalized random termination/normalized 1N. Similarly, the relative intensity of stall (RIS) was calculated. One way ANOVA and Bonferroni post tests were performed to determine statistical significance.
+ Open protocol
+ Expand
6

Screening Corydalis Tuber Phytochemicals

Check if the same lab product or an alternative is used in the 5 most similar protocols
Phytochemicals purified from Corydalis tuber were screened using MyoD luciferase assay and MHC western blotting. For the MyoD luciferase assay, C2C12 cells were plated for 24 h in 24-well plates and transiently transfected with the 4RTK reporter gene using Lipofectamine 2000 (Invitrogen; Thermo Fisher Scientific, Inc.) according to the manufacturer's protocol. Following incubation for 24 h, cells were treated with phytochemicals (10 nM) from Corydalis tuber for an additional 24 h. Luciferase activities were measured on a Berthold luminometer, integrating light emission over 20 sec. Transfection efficiencies were normalized by co-transfecting 50 ng of the β-galactosidase plasmid, pCH110 (GE Healthcare Life Sciences). All transfections were performed in duplicate a minimum of three times. The second screening was conducted using MHC western blotting. C2C12 cells were plated for 24 h in 6-well plates, and treated with phytochemicals (10 nM) from Corydalis tuber in 2% horse serum for an additional 48 h. The cells were lysed and western blotting was performed. The primary antibody used was anti-MHC, and quantification of the signal was performed using Image Gauge software version 4.0 (Fujifilm, Tokyo, Japan).
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!