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5 protocols using anti hur

1

Antibody Validation for AMPK Signaling

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Antibodies to caveolin-1, phospho-AMPKα T172, AMPKα, Histone H3, eNOS, and phospho-eNOS Ser1177 were from Cell Signaling Technology (Danvers, MA). Antibodies to LKB1 and GAPDH were purchased from Santa Cruz Biotechnology (Santa. Cruz, CA). Anti-HuR was purchased from Millipore (Temecula, CA). Anti-CD31 was from Abcam (Cambridge, UK). FuGene HD transfection reagent was from Roche Applied Science (Indianapolis, IN).
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2

RIP Assay for RNA-Binding Proteins

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The RIP assay was performed using a Magna RIP™ kit (Millipore, Burlington, MA, USA) following the manufacturer’s protocol. Briefly, Hs578T-shSCR cells were collected and suspended in an RIP lysis buffer. Cell extracts were incubated overnight at 4 °C with magnetic beads protein A/G conjugated with 5 μg of anti-HuR (Millipore, cat. #03-102), or IgG antibody (Millipore; cat. #PP64B). Each immunoprecipitate (IP) was treated with 0.5 mg/mL proteinase K (15 min at 55 °C). RNA isolated from IP material was analyzed using RT-qPCR. GAPDH mRNA in each IP was used for normalization of RIP results. Actin (ACTB) mRNA levels were used as a positive control. The RIP assay was performed in three independent replicates assayed in triplicate.
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3

Co-Immunoprecipitation of AFP and HuR

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Co-IP was performed as described previously30 (link). Briefly, cells were washed with ice-cold PBS and lysed in an immunoprecipitation assay buffer (50 mM Tris/HCl, pH 7.5, 150 mM NaCl, 1% Triton X-100, 1 mM EDTA and 10% glycerol) supplemented with the Protease/Phosphatase Inhibitor Cocktail (Cell Signaling Technology). The lysates were incubated on ice for 20 min and centrifuged at 12,000 rpm for 20 min at 4 °C. The cell lysates were incubated with an anti-AFP (SC-166325, Santa Cruz) or anti-HuR (#07–468, Millipore) antibody for 4 h, and an IgG antibody was used as a negative control. Following a washing step with PBS, protein G-sepharose beads (GE healthcare) were mixed with the whole-protein lysates and incubated for 1 h at 4 °C. The beads were washed four times with the immunoprecipitation assay buffer, suspended in Laemmli buffer, and boiled for 5 min. The eluted Co-IP lysates were analyzed by Western blotting.
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4

Western Blotting Antibody Detection

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Western blotting was performed as previously described [37 (link)]. The primary antibodies used were as follows: anti-Myc-tag antibody (#2276; 1:1000), anti-peIF4E Ser-209 (#9741; 1:1000), anti-Mnk1 C4C1 (#2195; 1:1000), anti-eIF4G (#2498; 1:1000), anti-YB1 (#4202; 1:1000), anti-mTOR 7C10 (#2983; 1:1000), anti-β-catenin (#9562; 1:1000; all from Cell Signaling); anti-EIF4ENIF1 (three different antibodies: 1:500; Sigma; 1:1000 Cell Signaling; 1:1000 Abnova); anti-Cyclin D1 M-20 (1:1000; Santa Cruz Biotechnology); anti-MCL1 Y37 (1:500), anti-Ago2 (1:500), anti-GAPDH 6C5 (1:2000; all from Abcam); and anti-HuR (1:500; Millipore). Anti-actin CP01 (1:500; Calbiochem, Darmstadt, Germany) was used as a loading control. The secondary antibodies used were donkey anti-rabbit IgG-HRP (NA9340; 1:2000) and donkey anti-mouse IgG-HRP (NA9340; 1:2000; both from Amersham Pharma-Biotech, Uppsala, Sweden). Bound antibodies were visualized with an enhanced chemiluminescence detection kit (Amersham Pharma-Biotech).
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5

Western Blot Analysis of Protein Complexes

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Cultured cells were harvested and resuspended in Roeder D (200 mg/ml glycerol, 100 mM KCl, 0.2 mM EDTA, 100 mM Tris pH 8.0, 500 μM DTT and 200 μM PMSF). Cell lysis was carried out in a Bioruptor® Plus sonication device (Diagenode) for 10 min (low intensity settings, 30s on/off). 60 μg of proteins in cell lysates were separated on a NuPAGE™ 4-12% Bis-Tris Protein Gel (Invitrogen) and transferred onto a nitrocellulose membrane (GE) in a GENIE® blotter (Idea Scientific) at 12V for 1 h. The membrane was blocked with 1:10 Western Blocking Reagent (Roche) in TBST (20 mM Tris pH 7.5, 137 mM NaCl and 0.1% (v/v) Tween 20). Proteins were detected with the following primary antibodies in TBST containing 1:20 Western Blocking Reagent, including rabbit polyclonal anti-HuR (Millipore), rabbit polyclonal DHX9 antibody (Proteintech), monoclonal anti-α-tubulin antibody (Sigma-Aldrich) and purified mouse anti-α-Synuclein (BD Biosciences). Following three washes in TBST, the membrane was incubated in the horseradish peroxidase (HRP) conjugated secondary anti-rabbit or anti-mouse IgG antibodies (Cell Signalling Technology) and developed with chemiluminescent substrate (Thermo #34580). Quantification of western blot bands were carried out in Image Studio Lite Ver 5.2.
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