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Xcellence pro software

Manufactured by Olympus
Sourced in Belgium, Japan

Xcellence Pro is a software package designed for data analysis and microscope control. It provides a comprehensive suite of tools for image acquisition, processing, and analysis. The software supports a wide range of Olympus microscope models and allows users to automate various imaging workflows.

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8 protocols using xcellence pro software

1

Intracellular Ca2+ and NO Imaging

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Cells were incubated with Fura-2 acetoxymethyl ester for 30 min at 37 °C. For recordings, bath solutions prepared in Krebs (containing (in mM): 150 NaCl, 6 KCl, 1.5 CaCl2, 1 MgCl2, and 10 HEPES, 10 glucose and titrated to 7.4 with NaOH) were perfused by gravity via a multi—barreled pipette tip. Intracellular Ca2+ concentration was monitored through the ratio of fluorescence measured upon alternating illumination at 340 and 380 nm using an MT-10 illumination system and the Xcellence pro software (Olympus Belgium N.V., Berchem, Belgium). The TRPV4 inhibitor HC067047 (10 µM) was perfused prior to LPS applications, as indicated in the Figures. The TLR4 inhibitor Cli-095 (1 µM) was added to the cells 20 min before measurements, and constant perfusion of this compound was kept during the measurements. PMB (300 µg ml−1) was added to LPS solutions and mixed for 30 min.
For simultaneous Ca2+ and NO imaging, cells were incubated with Fura-2 acetoxymethyl ester as detailed above and were also pre-loaded with 4-Amino-5-Methylamino-2',7'-Difluorofluorescein (DAF-FM) diacetate for 20 min. DAF-FM images were acquired using the excitation/emission wavelengths at ~488/520 nm. The fluorescence intensity of individual cells in each experiment is expressed as percentage of the average signal recorded at baseline (F/F0, %).
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2

Subcellular Localization Microscopy of CheW₁-EGFP and MamC-GBP Fusions

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Strains with genomic CheW1-EGFP fusions and additional MamC-GBP fusions were grown in 1 ml FSM in 24-well plates for 16 h at 30°C and 1% O2 without agitation. For microscopy, cells were immobilized on agarose pads (phosphate-buffered saline [PBS] buffer supplemented with 1% agarose) and imaged with an Olympus BX81 microscope equipped with a 100 UPLSAPO100XO objective (numerical aperture of 1.40) and a Hamamatsu Orca AG camera. The Olympus xcellence pro software was used to capture and analyze images.
To analyze relative positions of fluorescent foci, we manually segmented each cell along its long axis into four equal sectors and scored the fluorescent foci within each sector. The strongest fluorescence signal(s) was scored as “++,” and weaker signals were scored as “+.” Since the orientation of imaged cells was random and in many cases the distribution of fluorescent foci was not perfectly symmetric, we rotated the cells where necessary so that the sectors with the highest cumulated score were sectors 1 and 2. We then calculated relative frequencies of fluorescent focus positions based on the ratio of cumulated scoring points of all analyzed cells per sector divided by the total number of scoring points in all cells.
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3

Urothelial Cells Calcium Imaging

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Urothelial cells were incubated with Fura-2 acetoxymethyl (2 μM) ester for 30 min at 37°C. During recordings cells were perfused by gravity via a multi-barreled pipette tip with bath solutions prepared in Krebs, containing (in mM): 150 NaCl, 6 KCl, 1.5 CaCl2, 1 MgCl2, and 10 HEPES, 10 glucose and titrated to 7.4 with NaOH. Intracellular Ca2+ concentration was monitored through the ratio of fluorescence measured upon alternating illumination at 340 and 380 nm using an MT-10 illumination system and the Xcellence pro software (Olympus Belgium N.V., Berchem, Belgium).
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4

Angiogenesis Assay with VECs

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An angiogenesis μ-slide was coated with ice-cold Matrigel solution and incubated at 37 °C for at least 30 min to allow the Matrigel to solidify. The trypsinized VECs were counted and suspended in 1 mL per each CM at a density of 80,000 cells/mL. They were supplemented with 0.4% FCS; the cells were incubated 30 min prior to the transfer of 50 µL (4000 cells) on top of the gel. The μ-slide was incubated at 37 °C for 5h to allow cells to form micro-vessels. Images of the tubular structures were taken for each well at using an Olympus inverted microscope. The quantification was done measuring micro-vessels’ length using the Olympus Xcellence Pro software (Volketswil, CH, Switzerland).
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5

Quantitative Analysis of Microtissue Growth

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Randomly chosen live microtissues were analysed using microscopes equipped with a humidified chamber at 37 °C and 5% CO2. Pictures of microtissues were captured using the Live Cell Imaging System (Olympus, Shinjuku, Japan) and size of microtissues was measured with the Xcellence Pro software (Olympus) as area in pixels. Increase in size was calculated as the size of microtissue at day 10/size of microtissue at day 0. Videos of contracting microtissues were recorded using the AxioObserver Z1 (Zeiss, Hombrechtikon, Switzerland) and the ZEN software. Videos were processed using Fiji software and custom-made macro. Contraction analysis was performed using Fiji software and MUSCLEMOTION macro [15 (link)].
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6

Imaging Actin Dynamics in Activated JNLA Cells

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As described previously (Tsopoulidis et al., 2019 (link)), to study the actin dynamics in JNLA cells activated on stimulatory coverslips, 1–2 × 105 cells are put on the stimulatory coverslips for 5 min at 37℃ before fixing them with 3% PFA. Following permeabilization and blocking, coverslips are incubated with primary antibodies overnight at 4°C in 1% BSA (PBS). For phospho-specific targets/antibodies, all steps were done in 1× TBS. The following dilutions are used for the primary antibodies: rabbit anti-pTyr (1:100), rabbit anti-pSLP76 (1:1000), and mouse anti-mCherry (1:500). Species-specific secondary antibodies conjugated to Alexa Fluor 568/647 (1:1000) were used along with Phalloidin-Alexa Fluor 488 (1:600) for staining the F-actin. Although the nuclear lifeact reporter carries a nuclear export signal and thus also labels cytoplasmic F-actin, cortical F-actin is only labeled with low efficacy following permeabilization/fixation. An additional F-actin stain with Phalloidin is therefore required to efficiently stain and visualize cortical actin filaments. Coverslips were mounted with Mowiol (Merck Millipore) and analyzed by either epifluorescence microscopy (IX81 SIF-3 microscope and Xcellence Pro software; Olympus) or confocal microscopy (TCS SP8 microscope and LAS X software; from Leica).
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7

Fura-2-based Calcium Imaging in HEK293 Cells

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Changes in [Ca2+]i in HEK293 cells and TGN were monitored using ratiometric Fura-2-based fluorimetry. Cells were loaded with 2 μM Fura-2AM-ester (Alexis Biochemicals) for 30 min. Fluorescence was measured during repetitive illumination at 340 and 380 nm using the filter-based MT-10 illumination system and xcellence pro software (Olympus). Absolute calcium concentrations were calculated from the ratio of the fluorescence signal at both wavelengths was calculated67 (link).
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8

Angiogenesis Assay with VECs

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An angiogenesis μ-slide was coated with ice-cold Matrigel solution and incubated at 37 °C for at least 30 min to allow the Matrigel to solidify. The trypsinized VECs were counted and suspended in 1 mL per each CM at a density of 80,000 cells/mL. They were supplemented with 0.4% FCS; the cells were incubated 30 min prior to the transfer of 50 µL (4000 cells) on top of the gel. The μ-slide was incubated at 37 °C to allow cells to form micro-vessels overnight. Five images of the tubular structures were taken for each well at 10× magnification using an Olympus inverted microscope. The quantification was done measuring micro-vessels’ length using the Olympus Xcellence Pro software (Shinjuku, Japan).
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