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The MIL-7 is a laboratory instrument designed for the analysis and processing of biological and chemical samples. It features automated liquid handling capabilities to precisely dispense and mix liquids. The MIL-7 is capable of performing a range of laboratory tasks such as sample preparation, dilution, and reagent addition. Its core function is to provide reliable and accurate liquid handling to support various experimental and analytical workflows.

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13 protocols using mil 7

1

Knocking Down Hspa9 in B7 Cells

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B7 (Ba/F3 cells stably transduced with MSCV-mIL7R-IRES-GFP) cells were maintained at a density <2 million cells/mL in media with 10ng/mL mIL-7 (Peprotech), as previously described [28 (link)]. B7 cells were electroporated with 1000nM Hspa9-targeting siRNAs (Thermo Scientific: D-057872-03 [siRNA 1] and D-057872-04 [siRNA 2]) or non-targeting control siRNA (Thermo Scientific: D-001206-14) using a Nucleofector Device (Lonza) program X-001 according to manufacturer’s protocols.
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2

Pmel-1 iPSCs and mESCs Differentiation

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Pmel-1 iPSCs and mESCs were cultured using OP9 and OP9-DL1 stromal cell co-cultured system (24 (link)). In brief, 5 × 104 cells were plated on a 10-cm dish containing confluent OP9 cell monolayer in OP9 medium. On day 5 of culture, cells were trypsinized off, and 5 × 105 cells were transferred to a fresh culture 10-cm dish containing confluent OP9 cell monolayer in OP9 medium with the addition of hFlt3 ligand (5 ng/ml; R&D systems). On day 8 of culture and every 4 days thereafter, semiadherent stem cell-derived hematopoietic cells were collected, filtered through a 40μm nylon mesh, and were transferred onto fresh OP9-DL1 monolayers with the addition of hFlt3 ligand and mIL-7 (1 ng/ml; Peprotech). Semiadherent cells obtained from day 16 to 28 were used for further experiments.
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3

Adoptive T Cell Therapy for Melanoma in Mice

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Mice were injected subcutaneously with 5 × 105 B16F10 cells. For adoptive T cell therapy, Pmel-1 splenocytes were cultured with mIL-7 (10 ng/ml; Peprotech) and mIL-15 (10 ng/ml; Peprotech) for 6 days in the presence of 1μM of human (h) gp10025–33 peptide, KVPRNQDWL (GenScript). Mice were treated 12–14 days after tumor inoculation with i.v. adoptive transfer of in vitro-activated 1 × 106 T cells. We injected 15,000 IU recombinant human IL-2 (rhIL-2) (Peprotech, Inc) intraperitoneally once on the day of adoptive transfer and twice a day on the two following days. In some experiments, mice received 500 cGy of sublethal irradiation prior to adoptive T cell transfer to mimic the lymphodepletion. Mice were also vaccinated with 100 μl of saline containing 100 μg of hgp100 peptide, 50 μg of agonistic anti-CD40 Ab (clone FGK4.5, BioXcell), and 50 ug of poly(I:C) (InvivoGen) at the peritumoral site or 50 mg of imiquimod cream 5% (Perrigo) applied on the vaccination sites after adoptive transfer as described before (38 (link), 39 ). Tumor volumes were calculated by determining the length of short (l) and long (L) diameters (volume = l2 × L/2). Experimental end points were reached when tumors exceeded 20 mm in diameter or when mice became moribund and showed signs of lateral recumbency, cachexia, lack of response to noxious stimuli, or observable weight loss.
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4

Retroviral Transduction for B-ALL Modeling

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We adapted an established protocol (Li et al., 1999 (link)) to preferentially drive B-ALL rather than CML upon retroviral expression of BCR-ABL1P190. Bone marrow harvested from both femurs of 4-wk-old CD45.2+ mice was resuspended in ice-cold PBS, centrifuged at 1,500 rpm for 5 min at 4°C, and red blood cells were briefly lysed using red cell lysis buffer. Cells were resuspended in IMDM supplemented with 15% FCS, 10 ng/ml mIL-7 (PeproTech), 100 ng/ml mSCF (PeproTech), 50 ng/ml Flt3L and TPO (in-house), and 2 mM l-glutamine (Life Technologies), and incubated at 37°C, 10% CO2 overnight. Cells were then reresuspended in fresh media at 2 × 106 cells/ml. Retronectin-coated, non–tissue culture treated plates were coated with 1 ml of MSCV-BCR-ABL1-IRES-Luc2 and MSCV-IRES-tTA retrovirus. Viral supernatant was aspirated, and 1 ml of bone marrow cell suspension was plated per well followed by incubation cells at 37°C, 10% CO2 overnight. Infected cells were then injected intravenously into lethally irradiated CD45.2+ recipient mice. Similar methods were used to generate tet-on competent B-ALL; however, bone marrow was co-infected with MSCV-BCR-ABL1-IRES-Luc2 and MSCV-rtTA3-shIkaros.4056 before transplant.
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5

Differentiation of hematopoietic progenitors

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Sorted hematopoietic progenitors, transduced or non-transduced, were plated at 4,000–6,000 cells per well on a 24-well plate containing a confluent layer of OP9-DL1 cells and differentiated as described previously20 (link). Co-cultures were maintained in alpha MEM supplemented with 20% FCS, 5 μg/mL of hFlt-3L, and 5 μg/mL of mIL-7 (Peprotech) unless otherwise stated, and passaged onto fresh confluent OP9-DL1 every 4 days.
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6

Pmel-1 iPSC-Derived T Cell Activation Protocol

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Semiadherent Pmel-1 iPSC-derived cells on OP9-DL1 cells were harvested and filtered through a 40μm nylon mesh. CD8 expressing cells including CD4 CD8 double positive (DP) T cells and CD8 single positive (SP) T cells in Pmel-1 iPSC-derived cells, Pmel-1 splenocytes and thymocytes were isolated using anti-CD8 beads and MACS columns to eliminate OP9-DL1 cells during T cell activation. These cells (2 × 106 cells) were cultured with mIL-7 (10 ng/ml) and mIL-15 (10 ng/ml; Peprotech) for 2 days in the presence of 1μM of hgp100 peptide and mitomycin-C treated splenocytes from B6 mice (5 × 105 cells). These activated cells were cultured with IL-7 and IL-15 or IL-7, IL-15 and IL-2 from day 3, and used for further experiments on day 6–8.
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7

Determining Lymphoid Progenitor Potential

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A limiting dilution range of FACS-sorted cell populations were cocultured on stromal cells for 10 d, as described previously (Li et al., 2014 (link), 2017 (link)). OP9 or OP9-DL1 cells were seeded 1 d before coculture at 4,000 cells/well in 96-well tissue culture–treated plates (Falcon). For B cell potential, cells were cocultured on OP9 stroma in Alpha-MEM/20% FBS (Gibco) supplemented with 5 ng/ml mFlt3L and 10 ng/ml mIL7 (PeproTech). For T cell potential, cells were cocultured on OP9-DL1 stroma in Alpha-MEM/20% FBS supplemented with 5 ng/ml mFlt3L and 1 ng/ml mIL7. Progenitor frequencies were calculated using ELDA software (Hu and Smyth, 2009 (link)).
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8

Thymic stromal cell line culture protocol

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TD7, thymic stromal cell line established from fetal thymus (B6, embryonic day 15.5) was cultured in RPMI 1640 (Nissui Pharmaceutical Co., Tokyo)with 10% FBS, sodium pyruvate (Sigma), l-glutamine (Wako), penicillin (Meiji Seika Pharma), streptomycin (Meiji Seika Pharma), 2-ME (Gibco). These cell line seems to be derived from thymic mesenchymal cells as they express PDGFRα. OP9 cell line was kindly provided from Dr. K. Yokoyama (University of Tokyo, Yokoyama et al., 2013 (link)) and cultured in α-MEM (Wako) with 20% FBS, penicillin, streptomycin, 2-ME. This cell line kept features in common with OP9-K (RRID:CVCL_KB57). These cell lines were confirmed to be mycoplasma-free status before experiments. Pro-B cell lines were cultured in IMDM (Wako) with 10% FBS, penicillin, streptomycin, 2-ME, 10 ng/ml mSCF (Peprotech), 10 ng/ml hFlt3L (Peprotech), 10 ng/ml mIL7 (Peprotech) on TD7 or mitomycin C (Kyowa-Kirin)-treated OP9. For T-cell induction, pro-B cells were co-cultured on OP9-Dll4 for 3–7 days under the same conditions as the maintenance of pro-B cell lines.
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9

Feeder-layer Maintenance and Differentiation of iPSCs

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iPSCs were maintained on feeder layers of irradiated SNL76/7 cells in 6-well culture plates (Nunc), and were passaged every 3 days [16 (link)]. In brief, iPSCs were maintained in DMEM culture medium supplemented with 15% fetal calf serum (FCS), 0.1 mmol/L nonessential amino acids, 1 mmol/L L-glutamine (All were from Invitrogen), and 0.1 mmol/L β-mercaptoethanol (Sigma-Aldrich, St. Louis, MO, USA). Monolayers of OP9-DL1/DL4 cells were cultured in α-MEM medium supplemented with 20% FCS and 2.2 g/L sodium bicarbonate (All were from Invitrogen). The iPSCs were washed once in the OP9-DL1/DL4 medium before plating onto sub-confluent OP9-DL1/DL4 monolayers for T lineage differentiation in the presence of murine recombinant Flt-3 ligand (mrFlt3L; 5 ng/mL; Peprotech, Rocky Hill, NJ, USA) and 1 ng/mL murine IL-7 (mIL-7; Peprotech).
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10

Analysis of B Cell Differentiation

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For analysis of B cell differentiation, 5 x 104 transduced HSCs were transferred to flasks of OP9 stromal cells and co-cultured in B lymphoid-promoting medium (Alpha MEM supplemented with 20% FBS, 1% penicillin-streptomycin, 50 μM 2-mercaptoethanol, 10 ng/mL SCF, 10 ng/mL Flt3L and 10 ng/mL mIL-7 (PeproTech, Rocky Hill, NJ), and 250 ng/mL amphotericin B). Cells were harvested by trypsinization and resuspended in sorting buffer after 7 days of co-culture. Hardy fraction analysis of B cell differentiation was performed as previously described [35 (link)]. Briefly, cells were stained with 7-AAD (eBioscience) and the following antibodies: B220-Pacific blue, CD43-APC, BP-1-BV605, CD24-PE-Cy7, IgD-APC-Cy7, and IgM-PE-CF594 (BD Biosciences). Single-color stained cells and UltraComp beads (eBioscience) were used for compensation and to establish Hardy fraction gating. The following controls were used to exclude OP9 cells and non-transduced cells from ZsGreen+/RFP+ analysis: OP9 cells alone, non-transduced HSPCs alone, and OP9 cells with non-transduced HSPCs. Samples were analyzed on an LSR II flow cytometer and FACS plots were generated using FlowJo software.
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