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Applied cfx96 real time pcr system

Manufactured by Bio-Rad

The Applied CFX96® real‐time PCR system is a laboratory instrument used for the detection and quantification of nucleic acids through the process of real-time PCR (polymerase chain reaction). It provides precise temperature control and fluorescence detection capabilities to amplify and analyze DNA or RNA samples.

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2 protocols using applied cfx96 real time pcr system

1

Quantitative Analysis of Angiogenic Genes

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Total RNA extracts were obtained using TRIzol reagent (Invitrogen), and 1 μg of total RNA was used to synthesize cDNA (TaKaRa, Japan). qPCR was performed using the SYBR Green system (Bio‐Rad, Hercules, USA). Amplification of cDNA samples was carried out at 95°C for 3 min. followed by 40 cycles of 95°C for 15 sec. and 60°C for 45 sec. on an Applied CFX96® real‐time PCR system (Bio‐Rad). The relative quantification of target genes was normalized to housekeeping gene β‐actin, and target genes were compared to each corresponding target gene from the control sample using the 2−ΔΔCT method. The primers for VEGF‐A, KDR, PECAM‐1 and β‐actin are listed as follows: VEGF‐A (F) 5′‐AGCGGAGAAAGCATTTGTTTG‐3′, (R) 5′‐AACGCGAGTCTGTGTTTTTGC‐3′; KDR (F) 5′‐CACCATGCAGACGCTGACAT‐3′, (R) 5′‐TCTAGCTGCCAGTACCATTGGA‐3′; PECAM‐1 (F) 5′‐GCCCTGTCAC GTTTCAGTTT‐3′, (R) 5′‐CCACGGAGCAAGAAAGACTC‐3′; VE‐cadherin (F) 5′‐GTAACCCTGTAGGGAAAGAGTCCATT‐3′, (R) 5′‐GCATGCTCCCGATTAAA CTGCCCATA‐3′; β‐actin (F) 5′‐AACACCCCAGCCATGTACGTA‐3′, (R) 5′‐TCT CCGGAGTCCATCACAATG‐3′.
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2

Quantitative Gene Expression Analysis

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Total RNA extracts were obtained using TRIzol reagent (Invitrogen), and 1 μg of total RNA was used to synthesize cDNA (TaKaRa, Osaka, Japan). qPCR was performed using SYBR Green (Bio‐Rad, Hercules, USA). The cDNA samples were amplified on an Applied CFX96® real‐time PCR system (Bio‐Rad) under the following conditions: 95°C for 3 min., followed by 40 cycles of 95°C for 15 sec. and 60°C for 45 sec. The relative expression levels of the target genes were normalized to those of the housekeeping gene GAPDH, and the target genes from the experimental group were compared with the corresponding target genes from the control group using the 2−ΔΔCT method. The primers for iNOS, TNF‐α, COX‐2, Arg‐1 and GAPDH are listed in Table 1.
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