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15 protocols using isotype control igg

1

Receptor Interaction Profiling in Cells

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The antibodies anti-α1B-AR (host: rabbit; catalog#: ab169523), anti-α1D-AR (host: rabbit; catalog#: ab84402), and anti-CXCR4 (host: goat, ab1670) were obtained from Abcam; anti-AVPR1A (host: rabbit; catalog#: bs-11598R) was from Bioss; anti-AVPR1A (host: mouse, catalog#: LS-C126889) and anti-CCR8 (host: goat; catalog#: LS-C187704) were from LifeSpan Biosciences; anti-CXCR1 (host: rabbit, catalog#: PA5-33452) was from Invitrogen; and anti-CCR1 (host: mouse; catalog#: MAB145), anti-CCR2 (host: mouse; catalog#: MAB48607), IgG isotype control (host: rabbit, catalog#: MAB1050), IgG isotype control (host: mouse, catalog#: MAB004), and IgG isotype control (host: goat, catalog#: AB-108-C) were from R&D Systems. CCL2, CCL2325-99, CXCL8, and CXCL12 were purchased from Protein Foundry. Phenylephrine, phentolamine, arginine vasopressin, conivaptan, and poly-L-lysine were purchased from Sigma-Aldrich. AVPR1A siRNA and nontargeting (NT) siRNA and Accell transfection media were purchased from GE Dharmacon. Proximity ligation rabbit, mouse, and goat +/− probes and detection reagents were purchased from Sigma-Aldrich.
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2

Hypoxia Modulates Vascular Network Formation

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6 × 104 ASC/cm2 and 5 × 103 EC/cm2 were mixed in EBM‐2/5%FBS and plated on cell culture plastic. To evaluate the effect of hypoxia on vascular network formation, cocultures were incubated at 21% O2 (standard conditions) or at 0.5–5% O2 for up to 9 days with media exchange every third day. To challenge cells with low oxygen tension, plates were placed into Pro‐Ox C21/C‐Chamber (BioSpherix, Lacona, NY, USA). To evaluate the role of activin A in EC vasculogenesis, cocultures were incubated for the first 3 days of experiments in: (i) control media alone or supplemented with either 25 ng/ml of activin A or 10 μg/ml activin A neutralizing IgG, or isotype control IgG (R&D Systems, Minneapolis, MN, USA); (ii) 3.5‐fold concentrated media conditioned by EC for 72‐hr in normoxia or hypoxia, either unmodified or pre‐treated with 10 μg/ml activin A neutralizing IgG or isotype control IgG.
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3

In Vivo Tumor Immunotherapy Evaluation

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Prior to treatments initiation, mice were randomly assigned to different groups with similar average tumor volumes. For in vivo treatments, VC (4 g/kg body weight; daily; i.p.) (Sigma) or PBS control, Sora (15 mg/kg body weight; daily; i.g.) (MCE); PD-L1 antibodies (75 μg per mouse; twice a week; i.p.) (BioXCell) or IgG isotype control, rIL-2 (1 μg per mouse; daily; i.p.) (R&D systems) or PBS control, and C-176 (750 nmol per mouse; daily; i.p.) (MCE) or solvent were injected for 2 weeks beginning on day 7 after the establishment of mice liver cancer models. To deplete CD8+ T cells in vivo, mice were intraperitoneally injected with 100 μg of anti-CD8 antibody (BioXCell) or IgG isotype control (BioXCell) 3 days and 1 day before tumor implantation and twice weekly thereafter to ensure sustained depletion of CD8+ T cell subset during the experimental period.
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4

PBMC Osteoclastogenesis Assay with Cytokines

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Peripheral blood mononuclear cells (PBMCs) were isolated from a buffy coat (Sanquin) as described previously [26 (link)]. Buffy coats were obtained from blood donated by healthy blood donors at Sanquin Blood Supply, Amsterdam, The Netherlands. PBMCs were seeded at 5x105 cells/well of 96 well plates or on bovine bone slices in DMEM containing 10% FCS, antibiotics, and control-CM, CXCL8-CM from 200 pg/ml CXCL8 treatment, CCL20-CM from 500 pg/ml CCL20 treatment, CXCL8+CCL20-CM, and TNF-α-CM (ratio DMEM:CM = 1:1 (v/v)). Twenty-five ng/ml recombinant human M-CSF (R&D Systems, Minneapolis, MN) was added to the cells from day 1 to day 3. Ten ng/ml M-CSF and 4 ng/ml human RANKL (Peprotech, London, UK) were added from day 3 to day 21. To similar cultures, 0.15 μg/ml human IL-6 antibody (Clone #6708, R&D Systems) was added and IgG isotype control (Clone #11711, R&D Systems) was used as control for IL-6 antibody. PBMCs were also cultured with DMEM containing 10% FCS, antibiotics, and either CXCL8 (200 pg/ml) or CCL20 (500 pg/ml). After 3 weeks, cells were fixed in 4% formaldehyde, and stained for tartrate-resistant acid phosphatase (TRACP; Sigma). Nuclei were visualized by 4’,6-diamidino-2-phenylindole (DAPI) staining. Osteoclastogenesis was assessed by counting the number of TRACP-positive osteoclasts containing >3 nuclei per cell on 10 pre-determined microscopic fields in the each well.
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5

Neutralizing IL-6 and G-CSF in Tumor Microenvironment

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IL-6 in TCM was neutralized with an anti -IL-6 neutralizing antibody (R&D Systems), which was added to TCM to a final concentration of 10 μg/ml for 5 min before cells were added. Depletion of G-CSF was performed as previously described (13 (link)). Briefly, AT-3 tumor–bearing mice were injected with anti–G-CSF neutralizing antibody or immunoglobulin G (IgG) isotype control (10 μg, R&D systems) on day 7, when tumors became palpable. Injections continued for 8 days, and mice were sacrificed and spleens were collected on day 30 (15 days after the final injection with anti–G-CSF).
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6

Neutralizing WISP-1 in CAFs

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CM from CAFs was incubated for 2 h with 10 μg/ml mouse anti-mouse WISP-1 neutralizing antibody (R&D Systems) or 10 μg/ml IgG isotype control (R&D Systems). The neutralization efficiency of the anti-WISP-1 antibody was tested by WISP1 ELISA before use.
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7

Platelet-Monocyte Interaction Pathways

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Freshly isolated platelets and monocytes were preincubated for 30 minutes with 5 μg/ml actinomycin-D or 5 μg/ml cycloheximide (Sigma-Aldrich), to inhibit RNA transcription and translation, respectively, before the addition of thrombin. Specific pathway inhibitors were also added to thrombin-stimulated platelets and monocytes: U0126 (EMD Millipore, Billerica, MA), SB203580 (EMD Millipore, Billerica, MA), Bay-11-7082 (Sigma-Aldrich), and SP600125 (Sigma-Aldrich). To inhibit binding between P-selectin on the surface of activated platelets and P-selectin glycoprotein ligand-1 (PSGL-1) on the monocyte surface, an anti-P-selectin antibody 20 μg/ml or IgG isotype control (R&D Systems) was added to monocytes before addition of platelets and thrombin.
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8

Neutrophil Isolation and Stimulation Protocol

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Whole blood from human healthy donors was obtained at the Blood Donor Center (Karolinska University Hospital, Solna) and neutrophils were isolated using the MACSxpress Whole Blood Neutrophil Isolation Kit (Miltenyi Biotec, Bergisch Gladbach, Germany). In brief, 8 ml of whole blood per donor were incubated (5 min, room temperature) with antibody-conjugated magnetic beads that recognize surface antigens on all cell types present in human blood except neutrophils (negative selection). Samples were then subjected to a magnetic field (15 min) and non-target cells bound to the tube walls. Unbound neutrophils in plasma were pipetted into a separate tube and residual erythrocytes were removed via magnetic separation as described above using the MACSxpress Erythrocyte Depletion Kit (Miltenyi Biotec). Neutrophils were separated from plasma by centrifugation (400 RCF, 5 min), and resuspended in RPMI-1640 containing 0.2% penicillin-streptomycin (both from Gibco, Waltham, MA) and 10% donor-specific plasma. Resuspended neutrophils were seeded in 24-well plates (1×106 cells/well) and stimulated (6 or 18 h, 37°C, 5% CO2) in duplicate with LPS (E. coli 0127:B8, Sigma-Aldrich, Burlington, MA), recombinant human IL-26 dimer protein, human anti-IL-26 antibody, IgG isotype control (all from R&D Systems, Minneapolis, MN), or PBS (control).
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9

Flow Cytometric Analysis of MICA Expression

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The expression levels of MICA on the cell surface were determined using flow cytometry, as described previously [23 (link)]. Briefly, cells were hybridized with anti-MICA (1:500; R&D Systems, Minneapolis, MN, USA) and isotype control IgG (1:500; R&D Systems) in 5% BSA/1% sodium azide/PBS for 1 h at 4°C. After washing, cells were incubated with goat anti-mouse Alexa 488 (1:1,000; Molecular Probes, Eugene, OR, USA) for 30 min. Flow cytometry was performed and the data analyzed using Guava Easy Cyte Plus (GE Healthcare, Little Chalfont, UK).
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10

WISP1 Monoclonal Antibody Assay

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Anti-WISP1 monoclonal antibody, isotype control IgG and recombinant WISP1 protein were purchased from R&D Systems (Minneapolis, MN, USA).
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