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Scanscope xt scanner

Manufactured by Leica
Sourced in Germany, United States

The Leica Scanscope XT is a high-performance slide scanner designed for digital pathology applications. It captures digital images of physical glass slides with a high resolution and image quality. The scanner utilizes advanced optics and scanning technology to produce detailed digital representations of the original specimens.

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6 protocols using scanscope xt scanner

1

Boyden Chamber Cell Migration Assay

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Cell migration was analyzed using a Boyden chamber assay as described previously [23 (link)]. HCC1954 or BT474 TRZ_R breast cancer cells were placed in the upper compartment of the Boyden-chamber inserts with an 8-μm pore size fitted in 24-well plates (Becton-Dickinson, San Diego, CA, USA). Fresh culture medium with 10% FBS was added to the lower compartment of the chamber. At the end of the assay, after the cells on the upper side of the filter were removed, the filter was fixed with 100% methanol, and then stained with 0.1% crystal violet solution. The migrated cells were analyzed using a Scanscope XT scanner (Aperio Technologies, Vista, CA, USA).
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2

Retrospective Analysis of Neuroblastoma Tissue

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The retrospective part of the study involved the use of formalin-fixed, paraffin-embedded tissues. For each patient, hematoxylin and eosin (H&E) slides were retrieved from the laboratory information management system of the histopathology department at GOSH. Samples were obtained after needle biopsies at diagnosis and from surgical resection after induction chemotherapy. The sections of nine patients (udNB = 3, pdNB = 3, dNB = 3) were also stained with immunohistochemistry for CD31 (pan-endothelial marker) and used as a positive control for image processing. H&E and CD31 stained slides were digitized at 40× magnification using a ScanScope XT scanner (Aperio Technologies, Vista, CA, USA). The scanned slides were anonymized and saved on a secure external hard drive.
For the human pilot study, surgically excised material underwent routine histopathological processing. The remaining formalin-fixed discarded material was anonymized and stored at the histopathology department to be subsequently imaged with the PAI scanner.
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3

Quantifying Skin Collagen Deposition

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The mice were euthanized and cutaneous tissue from the irradiated area was harvested at weeks 9 and 17 post-irradiation. The circular piece of irradiated tissue was cut in half with the anterior half used for histology and the posterior half used for gene expression analysis (see Gene Expression below). Control skin which was not irradiated or treated with vehicle or PBM was harvested from the abdomen of the mice. After harvesting, the skin was placed on an index card, fixed in 10% neutral-buffered formalin, and processed for hematoxylin and eosin (H&E) and Masson’s trichrome staining using standard histological techniques. Both the H&E and Masson’s trichrome stained slides were then digitally captured using a Scanscope XT scanner (Leica, Wetzlar, Germany). To measure collagen deposition, measurements of skin thickness in the irradiated area were performed. Images of the trichrome-stained slides were processed using ImageJ (v1.49v, National Institutes of Health, Bethesda, MD). Each tissue section was divided into 10 equal sections and measurements of the four central sections were obtained to exclude edge artifacts from histologic processing. The measurements were performed at 4x magnification and included from the dermal-subcutaneous interface to the external surface of the epidermis.
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4

Quantifying Lung Metastasis in Mice After Breast Cancer Resection

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In separate studies, BC resection was done 25 days after tumour implant, as previously described.11 (link)–13 (link) Fifteen days after mastectomy, mice were sacrificed by carbon dioxide inhalation and lung tissues were removed. To confirm the presence of metastases, sections were cut and stained with haematoxylin and eosin (H&E), as previously described.11 (link)–13 (link) In brief, lungs were fixed in 4% phosphate-buffered formalin and embedded in paraffin. Five micrometres thick sections of lungs were made, and slides were counterstained with H&E for the detection of metastases. Images were acquired with a ScanScope XT scanner (Leica, Germany) and analysed with Aperio Digital Pathology software.
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5

Immunohistochemical Analysis of Tumor Vasculature

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Tumour mass were removed, fixed in 4% phosphate-buffered formalin and embedded in paraffin. For immunohistochemical analysis, 3–4 μm-thick tissue sections were stained with primary antibody CD31 (clone JC70A, DAKO). Antigen retrieval was performed with PTlink (Dako Cytomation, Glostrup, Denmark; code PT100/PT101) and the EnVision Flex Target Retrieval Solution High pH (DakoCytomation; code K8004). The immunohistochemical staining procedure was performed using a Dako Autostainer (Dako, Glostrup, Denmark). Images were acquired with a ScanScope XT scanner (Leica) and analysed with Aperio Digital Pathology software.
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6

Skin Histology and Collagen After Radiation

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The mice were euthanized and cutaneous tissue from the irradiated area was harvested at weeks 9 and 17 post‐irradiation. The circular piece of irradiated tissue was cut in half with the anterior half used for histology and the posterior half used for gene expression analysis (see Gene Expression below). Control skin which was not irradiated or treated with vehicle or PBM was harvested from the abdomen of the mice. After harvesting, the skin was placed on an index card, fixed in 10% neutral‐buffered formalin, and processed for hematoxylin and eosin (H&E) and Masson's trichrome staining using standard histological techniques. Both the H&E and Masson's trichrome stained slides were then digitally captured using a Scanscope XT scanner (Leica, Wetzlar, Germany). To measure collagen deposition, measurements of skin thickness in the irradiated area were performed. Images of the trichrome‐stained slides were processed using ImageJ (v1.49v, National Institutes of Health, Bethesda, MD). Each tissue section was divided into 10 equal sections and measurements of the four central sections were obtained to exclude edge artifacts from histologic processing. The measurements were performed at 4× magnification and included from the dermal‐subcutaneous interface to the external surface of the epidermis.
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