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5 protocols using thymidine

1

Synchronizing Cells in Late M-Phase

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HEK293T (American Tissue Culture Collection), SV589 (SV40 immortalized human fibroblasts; Yamamoto et al., 1984 (link)), RC55, RC65, and RC65+55 cells were cultured at 37°C and 5% CO2 in DMEM (Mediatech) supplemented with 10% cosmic calf serum (HyClone), 100 U/ml penicillin (GoldBio), and 100 µg/ml streptomycin (GoldBio; PenStrep). Expression of OsTIR1-2xMyc was induced with 0.5 µg/ml doxycycline (Sigma) for 6 h or 20 h before inducing degradation of GRASP55 and/or 65 by the addition of 500 µM IAA (Abcam). The Golgi ribbon was disassembled into single stacks by treatment with 3 µg/ml nocodazole (EMD Millipore) for 2 h, while complete disassembly into vesicles was triggered with 5 µg/ml BFA (LC Laboratories) for 30 min. MG132 (Boston Biotech) was added at 10 µM to inhibit protein degradation by the proteasome.
To enrich cells in late M-phase, RC55, RC65, and RC65+55 cells were first synchronized at the G1/S phase transition by double thymidine block. Cells were treated with 2 mM thymidine (Chem-Impex) for 16 h; thymidine was then washed out for 8 h and added again for an additional 16 h. 10 h after the last release from thymidine block, we added 20 µM STLC (Acros) for 4 h to arrest cells in prometaphase. STLC was then removed to allow cells to progress into telophase/cytokinesis, and cells were fixed and processed for immunofluorescence or EM analysis.
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2

Golgi Ribbon Disassembly During Mitosis

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HEK 293T, SV589 (immortalized human fibroblasts) (Yamamoto et al., 1984) , RC55, RC65 and RC65+55 cells were cultured at 37°C and 5% CO2 in DMEM (Mediatech) supplemented with 10% cosmic calf serum (CCS) (HyClone), 100 units/ml penicillin (GoldBio) and 100 µg/ml streptomycin (GoldBio) (PenStrep).
Expression of OsTIR1-2xMyc was induced with 0.5 µg/ml doxycycline (Sigma) for 6 or 20 hours before inducing degradation of GRASP55 and/or GRASP65 by addition of 500 µM indole-3-acetic acid (IAA, Abcam). The Golgi ribbon was disassembled into single stacks by treatment with 3 µg/ml nocodazole (EMD Millipore) for 2 hours, while complete disassembly into vesicles was triggered with 5 µg/ml Brefeldin A (BFA, LC Laboratories) for 30 min. MG132 (Boston Biotech) was added at 10 µM to inhibit protein degradation by the proteasome.
To enrich cells in late M-phase, we first synchronized RC55, RC65 and RC65+55 cells at the G1/S phase transition by double thymidine block. Cells were treated with 2 mM thymidine (Chem-Impex) for 16 h, thymidine was then washed out for 8 h and added again for an additional 16 h. 10 hours after the last release from thymidine block, we added 20 µM S-Trityl-L-Cysteine (STLC, Acros) for 4 h to arrest cells in prometaphase. STLC was then removed to allow cells to progress into telophase/cytokinesis and cells were fixed and processed for EM analysis.
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3

Cell Synchronization and Mitotic Arrest

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HEK293T, HeLa and normal rat kidney (NRK) cells were cultured at 37 °C and 5% CO2 in complete growth medium [Dulbecco's modified Eagle's medium (Mediatech) supplemented with 10% cosmic calf serum (HyClone), 100 units/ml penicillin and 100 µg/ml streptomycin].
NRK cells were synchronized at the G1/S phase transition by 16 h treatment with 2 mM thymidine (Chem-Impex). Then, we washed out the thymidine and added 24 µM 2'deoxycytidine (Chem-Impex). Five hours after release from thymidine, we added 10 µM MG132 (Boston Biotech) for 1 h to arrest cells in metaphase.
HeLa cells and HeLa cells expressing FLAG-tagged WT or S62A importin α were synchronized in mitosis by treatment with 20 µM S-Trityl-L-Cysteine (Acros) for 16 h. The mitotic cells were (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission.
The copyright holder for this preprint this version posted March 17, 2020. ; https://doi.org/10.1101/2020.03.16.994426 doi: bioRxiv preprint 21 then collected by shake-off, followed by centrifugation. We employed 200 µM AurkinA (Aobious) in complete culture medium to block the association of TPX2 with Aurora A kinase.
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4

Multicolor Live-Cell Imaging of Cell Cycle

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Two bicistronic lentiviruses containing the EMCV IRES were used to infect cells. One co-expressed Clover fused to human Geminin aa 1-110 (Life Technologies) with a 10-aa linker (Clover-Geminin(1-110)) and mKO2 fused to human Cdt1 aa 30-120 (Life Technologies) with a 10-aa linker (mKO2-Cdt1(30-120)). The other virus co-expressed either mTurquoise2 fused to PCNA (J. Ferrell, Stanford University) with a 23-aa linker (mTurquoise2-PCNA) or mTurquoise2-SLBP(18-126) and H1.0-mMaroon1. Cells were cultured in LabTek 8-chamber slides, infected by packaged viruses, and imaged using the above four-color epifluorescence imaging protocol, except an environmental control system (Live Cell Instrument) was used to incubate the cells at 37 °C under 5% CO2 and images were acquired every 15 min. For double thymidine block, cells were infected with the two lentiviruses expressing Fucci4 indicators in LabTek 8-chambered coverglasses. Cells were incubated in 2 mM thymidine (Chem-Impex) for 18 hr, fresh media for 9 hr, and 2 mM thymidine again for 15 hr, then imaged using the above four-color epifluorescence imaging protocol.
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5

Comprehensive Cell Signaling Assays

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Lipofectamine 2000, Invitrogen (11668019); Lipofectamine RNAiMAX, Invitrogen (13778150); Polybrene Infection/Transfection Reagent, Sigma-Aldrich (TR-1003); GFP-Trap magnetic agarose, ChromoTek (gtma-20); Trypsin Gold Mass Spectrometry Grade, Promega (V5280); Protein G Sepharose, BioVision (6511); Thymidine, Chem-Impex (00306); Propidium iodide, Sigma-Aldrich (P4170); RNase A, Research Products International (R21750); Nocodazole, AdipoGen (AG-CR1-0019); (+)-S-Trityl-L-cysteine, Alfa Aesar (L14384); Puromycin dihydrochloride, Sigma-Aldrich (P8833); Blasticidin S hydrochloride, 10 mg/ml in HEPES buffer, Alfa Aesar (J67216); Hygromycin B, 50 mg/mL in PBS, Invitrogen (10687010); cOmplete Protease Inhibitor Cocktail, Roche (5056489001); Sodium β-glycerophosphate pentahydrate, Alfa Aesar (L03425); Sodium fluoride, Chem-Impex (01523); Sodium pyrophosphate decahydrate, Fisher (S390); Sodium orthovanadate, MP Bio (0215966410); UBE1, R&D Systems (E-304); UBE2C, R&D Systems (E2-654); UBE2S, R&D Systems (E2-690); securin, Abcam (ab87664); D-biotin, Chem-Impex (00033); Streptavidin Alexa Fluor 568, Invitrogen (S11226); Pierce™ High Capacity Streptavidin Agarose, Thermo Fisher (20359); Streptavidin-conjugated HRP, GeneTex (GTX85912); ProLong™ Diamond Antifade Mountant with DAPI, Thermo Fisher (P36971); Clarity™ Western ECL Substrate, Bio-Rad (1705061).
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