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5 protocols using ulixertinib

1

Preparation and Handling of Common Pharmacological Agents

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Stocks of 10 mM PP242 (Sigma, #P0037), 25 mM Latrunculin A (Enzo, #BML-T119–0100), 10 mM Ulixertinib (MedChemExpress, #HY-15816), 50 mM LY294002 (Invitrogen, #PHZ1144), 10 mM ZSTK474 (Cell Signaling, #13213), 10 mM Y27632 (Enzo, #ALX-270–333-M001), 25 mM Latrunculin B (Enzo, #BML-T110–0001), 1 mM Jasplakinolide (Enzo, #ALX-350–275-C050) and 10 mM Rapamycin (Cayman, #13346) were prepared by dissolving the chemicals in DMSO. The stocks were diluted to the indicated final concentrations in culture medium or live cell imaging medium. The EGF stock solution was prepared by dissolving EGF (Sigma, #E9644) in 10 mM acetic acid to a final concentration of 1 mg/ml. Insulin (Sigma #I-1882) was resuspended at 10 mg/ml in sterile ddH2O containing 1% glacial acetic acid. Hydrocortisone (Sigma #H-0888) was resuspended at 1 mg/ml in 200 proof ethanol. Cholera toxin (Sigma #C-8052) was resuspended at 1 mg/ml in sterile ddH2O and stored at 4°C. All drug stocks except Cholera toxin were stored at −20°C.
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2

Evaluating METTL1 Expression and Drug Sensitivity

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The expression of METTL1 in various cell lines were obtained from CCLE. The AUC value which indicated cellular sensitivity to drugs were obtained from GDSC. Then we performed spearman correlation analysis to estimate the association between drug sensitivity and METTL1 expression. A positive correlation indicates that cell lines with high METTL1 expression have higher AUC values and lower sensitivity to specific drugs, whereas a negative correlation indicates that cell lines with high METTL1 expression have lower AUC values and higher sensitivity to specific drugs. Besides, EPZ5676 and Ulixertinib were purchased from MedChemExpress (USA).
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3

Evaluation of BRAF and ERK Inhibitors

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Dabrafenib (GSK2118436, BRAFi), vemurafenib (PLX4032), and SCH772984 (ERKi-SCH) were purchased from SelleckChem. Ulixertinib (ERKi-Uli) was purchased from MedChem Express. Fibronectin was purchased from Sigma. For in vitro studies, drugs were dissolved in either dimethyl sulfoxide (DMSO) for Dabrafenib, vemurafenib, SCH772984, and Ulixertinib or water for Fibronectin. For in vivo studies, Dabrafenib and Ulixertinib were dissolved in 1% carboxymethylcellulose.
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4

Trametinib and Ulixertinib Compound Evaluation

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EOAI3402143 (HY-111408), Trametinib (HY-10999), Ulixertinib (HY-15816), HPMC (Hypromellose, HY-A0104), PEG300 (HY-Y0873), Tween80 (HY-Y1891), Tunicamycin (HY-A0098), and MG132 (HY-13259) were purchased from MedChemExpress. Cycloheximide (C7698) was purchased from Sigma. Protease inhibitors (B14002) and phosphatase inhibitors (B15001) were purchased from Bimake.
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5

Screening Chemical Inhibitors for Cell Death

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U0126 was obtained from Cayman Chemical (Ann Arbor, MI). Fer-1, MEK inhibitor I, (Z)-4-hydroxytamoxifen (Tamoxifen), DFO, Trolox, and 3-methyladenine (3-MA) and erastin were obtained from Merck Millipore (Burlington, MA). RSL3, Z-VAD-FMK, and Ulixertinib were obtained from MedChemExpress (Monmouth Junction, NJ). Necrostatin 2 racemate (Nec-1s), pluripotin, and AZD0364 were obtained from Selleck Chemicals (Huston, TX). The chemical inhibitor library for several enzymes (SCADS inhibitor kits) was kindly gifted by the Molecular Profiling Committee.
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