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4 protocols using anti cleaved caspase 3 clone 5a1e

1

Immune Signaling Pathway Modulation

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Poly(I:C) (high molecular weight) was from Invivogen (San diego, CA, USA) and was used at 100 µg/ml unless otherwise stated. Z-VAD-FMK (R&D systems, Minneapolis, MN, USA) was used at 20 µM. Smac mimetic BV6 was first a gift from Ira Mellman and Wayne Fairbrother (Genentech, CA, USA), and later purchased from Selleckchem (Houston, TX, USA), and was used at 5 µM. Paclitaxel and necrostatin-1 were purchased from Sigma-Aldrich. RIPK3 kinase inhibitor GSK'872 was from Merck-Calbiochem (Darmstadt, Germany).
Antibodies were purchased from the following companies: anti-caspase-8 (clone C-20) (Santa CruzBiotechnology, Dallas, TX, USA), anti-actin (clone C4) (MP Biomedicals Europe, Illkirch, France), anticIAP1/2 (clone 315301) (R&D systems), anti-RIPK1 (clone 38) (BD Biosciences, San Jose, CA, USA), anti-FLIP (clone NF6) (Alexis Biochemicals, San Diego, CA, USA) anti-TRIF (Cell Signaling Technology, Danvers, MA, USA), anti-Bcl-xL (Cell Signaling), anti-TLR3 (cloneD10F10) (Cell Signaling) and clone 1210F1 (Dendritics, Lyon, France), anti-caspase-8 (clone 1C12) (Cell Signaling), anti-caspase-3 (Cell Signaling), anti-cleaved caspase 3 (clone 5A1E) (Cell Signaling), and anti-RIPK3 (clone E1Z1D) (Cell Signaling).
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2

Immunohistochemical Profiling of Tissues

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All collected tissues were sectioned and stained with hematoxylin and eosin for histological evaluation. For IHC staining to detect specific antigens, the following antibodies were used: anti-Ki67 (Neomarkers), anti–cleaved caspase-3 (clone 5A1E, Cell Signaling), anti-CD8 (BD Biosciences), anti-NK1.1 (PK136, eBioscience), anti-SV40Tag (Santa Cruz), anti–arginase I (Santa Cruz), and anti-p63 (Neomarkers). The IHC staining protocol has been previously described (39 (link), 42 (link)). All sections were counterstained with hematoxylin for nucleus visualization.
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3

Immunopathological Analysis of Tissue Samples

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Immunopathological analysis was provided by the iPATH.Berlin—Immunopathology for Experimental Models, core unit of the Charité—Universitätsmedizin Berlin (Berlin, Germany). Formalin-fixed tissue samples were embedded in paraffin and 1–2 μm thick sections were cut from paraffin blocks. Sections were dewaxed and histochemically stained with H&E (hematoxylin&eosin) for evaluation of histomorphology or subjected to a heat-induced epitope retrieval step prior to incubation with anti-Ki67 (clone 16A8, BioLegend), anticleaved caspase 3 (clone 5A1E, Cell Signaling). For detection of Ki67 and cleaved caspase3, sections were incubated with secondary antibody (biotinylated rabbit antirat and biotinylated donkey antirabbit, respectively; Dianova). Biotin was detected by streptavidin coupled with alkaline phosphatase (AP) and RED as chromogen (both Dako REAL™ Detection System, Alkaline Phosphatase/RED, Rabbit/Mouse, Agilent Technologies). Nuclei were counterstained with hematoxylin (Merck Millipore) and slides coverslipped with glycerol gelatine (Merck). Whole slide scans were acquired by a Vectra® 3 imaging system (PerkinElmer).
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4

Quantifying Apoptosis in Rabbit Tissue

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It was used rabbit monoclonal antibody anti-cleaved caspase-3, clone 5A1E -Cell Signaling Technology®. The number of apoptotic bodies was counted by the pathologist, without prior knowledge of the group to which each animal belonged. The scale for the quantification of the apoptotic corpuscles was done as described previously All images and measurements were obtained using the Axion Vision REL 4.6 -Carl Zeiss.
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