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4 protocols using m 112

1

Quantifying Chromatin Protein Levels

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Protein extracts were separated by SDS–polyacrylamide gel electrophoresis, transferred to nitrocellulose membranes, and probed with antibodies against Daxx (M-112, Santa Cruz Biotechnology, 1:500), Atrx (H-300, Santa Cruz Biotechnology, 1:1,000), β-actin (A1978, Sigma, 1:5000) and H3.3 (Ab176840, Abcam, 1:1000). Proteins were visualized using Li-COR secondary antibodies and imaged using a ChemiDoc System (Bio-Rad). Protein levels were quantified in ImageJ and normalized to the level in the first lane.
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2

Immunoblotting Antibody Panel for EMT Analysis

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Primary antibodies used for immunoblotting were as follows: monoclonal anti-HA (1:5,000; HA11; Covance), anti-Flag (1:5,000; M2; Sigma Aldrich), anti-Daxx (1:2,000, M112; Santa Cruz Biotechnology), anti-E-cadherin (1:1,000; 610182, BD Biosciences), anti-occludin (1:2,000; 13409, Proteintech), anti-vimentin (1:10,000; 550513, BD Biosciences), anti-N-cadherin (1:1,000; 610921, BD Biosciences), polyclonal anti-Slug (1:1,000; G18, Santa Cruz Biotechnology), anti-β-actin (1:10,000; AC-15, Sigma Aldrich), anti-HIF-1α (1:2,000; 610958, BD Biosciences), anti-HIF-2α (1:1,000; 7096, Cell Signaling) and anti-HIF-1β (1:2,000; 5537, Cell Signaling).
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3

ATRX, DAXX, and Lamin A/C Detection

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Cells were lysed with NETN lysis buffer (100 mM NaCl, 0.5 mM EDTA, 50 mM Tris–HCl, pH 8.0 and 0.5% NP-40) with protease inhibitor cocktail (Roche cOmplete, EDTA-free). The protein samples were separated by SDS-PAGE gel, and then transferred to nitrocellulose membrane. The following antibodies were used; anti-ATRX antibody (H-300 Santa Cruz Biotechnology, A301-045A Bethyl Laboratories), DAXX (M-112 Santa Cruz Biotechnology), Anti-Lamin A/C (4C11 Cell Signaling), and Actin (A1978 Sigma-Aldrich).
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4

Western Blot Analysis of Chromatin Regulators

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Tissue samples were flash frozen, pulverized and lysed in sodium dodecyl sulfate (SDS) lysis buffer (1% SDS, 6.5 mM Tris-HCl pH 6.8, 25% glycerol, 10% β-mercaptoethanol). Protein extracts were separated by SDS/polyacrylamide gel electrophoresis (PAGE), transferred to nitrocellulose membranes, and probed with antibodies against Daxx (M-112, Santa Cruz Biotechnology, 1:1000), Atrx (H-300, Santa Cruz Biotechnology, 1:500), Men1 (A300-105A, Bethyl Laboratories, 1:1000), vinculin (V9131, Millipore Sigma, 1:1000) and actin (12004163, Bio-Rad, 1:5000). Proteins were visualized using Li-COR secondary antibodies and imaged using a ChemiDoc System (Bio-Rad). Signal was quantified using ImageJ software (NIH).
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