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12 protocols using et1601 4

1

Hippocampal SIRT1 and BDNF Protein Analysis

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The hippocampal tissue was placed in the RIPA lysate with PMSF protease inhibitor for homogenization, followed by centrifugation at 12,000 rpm at 4 ℃ to collect the supernatant. A Bicinchoninic acid (BCA) Protein Assay Kit (Beyotime, P0010, Shanghai, China) was used for measuring the protein concentration, and the proteins were subsequently treated with RIPA lysis buffer for further processing. The sample was then boiled for 10 min, cooled and subjected to sodium dodecyl sulphate–polyacrylamide gel electrophoresis (SDS-PAGE) for separation. The protein that has been isolated was moved onto a polyvinylidene fluoride (PVDF) membrane from Merck Millipore (ISEQ00010, USA). After an hour of using 5% skim milk to block the PVDF membrane. And then it was exposed to primary antibodies: SIRT1 (1:1000, 9475S, Cell Signaling Technology), BDNF (1:1000, ab108319, Abcam), and GAPDH (1:1000, ET1601-4, HUABIO) overnight in cold storage at 4 ℃. The membranes were then treated with an antibody conjugate with horseradish peroxidase (1:2000, Beyotime) for an hour at room temperature. The protein bands were then subjected to a quantitative analysis utilizing ImageJ software and an Enhanced Chemiluminescence (ECL) detection system (Beyotime).
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2

Liver Protein Quantification and Western Blot

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Total protein concentration in liver was determined with a BCA Protein Quantification Kit (E112-02, vazyme, Nanjing, China). After boiling denaturation, total protein (35 μg) was separated by 10%~12% SDS-PAGE, then transferred to PVDF membranes (ISEQ00010, Millipore, Billerica, MA, USA). The membranes were blocked with 5% skim milk for 2 h at room temperature and then incubated (overnight at 4°C) with the following primary antibodies: Rabbit anti-indoleamine 2,3-dioxygenase 1 (IDO-1, 1:1000, 13268-1-AP, Proteintech, Wuhan, China), Rabbit anti-TDO-2 (1:500, 15880-1-AP, Proteintech, Wuhan, China), Rabbit anti-AADAT (KAT2, 1:500, A13090, ABclonal, Wuhan, China) and Rabbit anti-GAPDH (1:8000, ET1601-4, Huabio, Hangzhou, China). Then the HRP conjugated goat anti-rabbit IgG was incubated for 2 h at room temperature. The protein bands were visualized by enhanced chemiluminescence (ECL) reagent (P90720, Millipore, USA) and Gel Image System (Bio-Rad, Hercules, CA, USA). Target signals were analyzed by using Image J software (NIH, Bethesda, MA, USA).
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3

Protein Expression Analysis in Cell Lysates

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Cells were lysed in RIPA buffer (Solarbio) plus a phosphatase inhibitor cocktail (Epizyme Biotech). The supernatants of lysates were separated by SDS‐PAGE and then blotted on the nitrocellulose blotting membranes (MilliporeSigma, Burkington, MA). The membranes were incubated with primary antibodies against Phospho-STAT3 (1:1000, 9145S, CST), STAT3 (1:1000, 10253-2-AP, Proteintech), MMP2 (1:1000, 10373-2-AP, Proteintech), VEGFA (1:1000, 19003-1-AP, Proteintech), PDGFB (1:1000, AF0240, Affinity) and GAPDH (1:10000, ET1601-4, HUABIO), P16 (1:1000, AF5484, Affinity), P21 (1:1000, 28248-1-AP, Proteintech), γH2A.X (1:1000, ab81299, Abcam), TGFβ (1:1000, sc-130348, Santa Cruz Biotechnology, Inc.), Bax (1:1000, 50599-2-Ig, Proteintech), Bcl2 (1:1000, 3498S, CST), F4/80 (1:500, 14-4801-82, eBioscience), CD31 (1:1000, sc-376764, Santa Cruz Biotechnology, Inc.), OSX (1:1000, A18699, ABclonal) and β actin (1:5000, 20536-1-AP, Proteintech) overnight at 4 °C. Then, the membranes were washed with TBST and incubated with secondary antibodies (1:10000, SA00001-2, Proteintech) for 1 h. The membranes were washed with TBST and then exposed to ECL Chemiluminescent Kit (SQ202, Epizyme Biotech). The signals were quantified using Image-Pro Plus software (Media Cybernetics, Rockville, MD, USA).
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4

Western Blot Analysis of Key Proteins

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Cells were lysed in ice-cold cell lysis buffer (50 mM Tris [pH 7.5], 150 mM NaCl, 1% Triton X-100, 1 mM EDTA) supplemented with protease inhibitor cocktail (Roche, cat#11836153001) and DTT. The proteins were separated on 10% SDS-PAGE gels and electrotransferred onto Nitrocellulose Transfer Membrane (PALL, P-N66485) that were placed in 5% skimmed milk for blocking. Probing was performed with specific primary antibodies (4°C, overnight) and horseradish peroxidase-conjugated secondary antibodies (Room temperature for 1 h). The primary antibodies used in this study targeted LSD1 (gifts of Prof.Jiemin Wong, dilution 1:1000; HUABIO # ER1802-12, dilution 1:1000), c-Myc (Abcam#ab32072, dilution 1:1000; ZENBIO #380784, dilution 1:1000), β-Tubulin (Abmart #M30109, dilution 1:2000), Pol II (Santa Cruz #sc-47701, dilution 1:1000), Phospho-Pol II (Ser2) (ZENBIO #381832, dilution 1:1000), Phospho-Pol II (Ser5) (ZENBIO #381833 dilution 1:1000), GAPDH(HUABIO #ET1601-4, dilution 1:1000).
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5

Western Blot Analysis of Piezo1 Expression

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RIPA lysis buffer (Solarbio) was added to the retina and well cut up with scissors, followed by further lysis with ultrasound (Qsonica, Newtown, CT, USA). The supernatant was collected after centrifugation at 12,000×g for 15 minutes, and protein concentration was determined by the BCA kit (Beyotime). The samples were mixed with a 5× protein loading buffer (Beyotime) and then placed at 100°C for 15 minutes; the protein samples were loaded on 8% SDS-PAGE gel and transferred to polyvinylidene difluoride membranes. Then, the membranes were blocked with 5% nonfat milk at room temperature for 1.5 hours and incubated with the primary antibody (anti-Piezo1, 1:500, M1005-2, Huabio; anti-GAPDH, 1:5000, ET1601-4, Huabio) at 4°C overnight. After that, the membranes were incubated with a secondary antibody (1:10,000; Boster) for 1 hour at room temperature. Finally, the bands were exposed using the ECL developer solution (Biosharp), and the optical density was quantified using ImageJ software.
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6

Western Blot Analysis of Stem Cell Markers

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Tissue was weighed and homogenized in RIPA extraction buffer (Solarbio, China). The homogenate was centrifuged at 4 °C for 15 min at 15,000 × g, then the supernatant was collected. The protein concentration was quantified with BCA protein assay kits (Meilun, China) according to the manufacturer’s instructions. Proteins were separated by 10% SDS polyacrylamide gel and then transferred onto PVDF membranes. The membranes were blocked with 5% skimmed milk for 1 h and then immunoblotted with primary antibodies: p53 (ab167161, Abcam,1:1000), p21 (sc-6246,Santa Cruz,1:500), Lgr5 (Bioss, bs-20747R, 1:1000), c-Myc (CST, #5605S, 1:1000), Cyclin D1 (CST, # 2978, 1:1000), Active β-Catenin (CST. # 8814, 1:1000), Reg4 (Abclonal, A13129, 1:1000), β-actin (ET1701-80, HUABIO, 1:1000), Gapdh (ET1601-4, HUABIO,1:1000) at 4 °C overnight. Membranes were then incubated with second antibodies (HA1019, HA1006, HUABIO,1:10,000) labeled with HRP at room temperature for 2 h, and bands were visualized using an ECL kit (Fdbio science, China). β-Actin or Gapdh was used as a reference protein.
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7

Apoptosis Signaling Pathway Evaluation

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After appropriate stimulation, equal amounts of protein (30 μg) extracted from macrophages were separated by sodium dodecyl sulfate-polyacrylamide gel electrophoresis and transferred to nitrocellulose membranes. The membranes were blocked in Tris-buffered saline Tween-20 containing 5% BSA for 1 h and then incubated overnight at 4°C with primary antibodies against B-cell lymphoma-2 (BCL-2), BCL2-associated X (BAX), pro-casepase-3, casepase-3, and GAPDH. After incubation with a secondary antibody for 1 h at room temperature, the membranes were visualized using the chemiluminescence method. Antibodies against BCL-2 (ET1603-11; Dilution: 1:1,000), BAX (ET603-34; Dilution: 1:1,000), pro-casepase-3 (ET1608-64; Dilution: 1:1,000), casepase3 (ET1602-47; Dilution: 1:1,000), and GAPDH (ET1601-4; Dilution: 1:3,000) were purchased from HuaBio (Hangzhou, China).
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8

Western Blot Analysis of Tight Junction Proteins

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The cells were washed three times with PBS and lysed in radioimmunoprecipitation assay buffer containing proteinase inhibitors. After BCA total protein quantification, 30 µg of total proteins were loaded on 10% SDS-PAGE gels and then transferred to the PVDF membrane. After being blocked with 5% milk solution at room temperature for 1 h and washed with 1 × tris-buffered saline tween three times, membranes were then incubated with the primary antibodies overnight at 4℃, and then further incubated with HRP-conjugated anti-rabbit secondary antibody (HA1001, Huabio, Hangzhou, China) for 1 h at room temperature. All the blots were visualized using ECL (Millipore Sigma, Burlington, MA, United States) and detected using BLT (GelView 6000 Pro, Antpedia, Guangzhou, China). The following primary antibodies were used: ALPL (1:1000, 11187-1-AP, Proteintech, China), ZO-1 (1:1000, 21773-1-AP, Proteintech), t-Claudin5 (1:500, 29767-1-AP, Proteintech), p-Claudin5 (1:1000, PA5-105058, Thermo Fisher, USA), Occludin (1:1000, 27260-1-AP, Proteintech), GAPDH (1:5000, ET1601-4, Huabio), and β-tubulin (1:5000, ET1602-4, Huabio).
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9

Protein Expression Analysis of LUAD Tissues

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Total proteins were extracted from 12 pairs of fresh frozen LUAD tissues and their corresponding adjacent tissues using the Whole Protein Extraction Kit (Solarbio, China). The Omni-EasyTM Instant BCA Protein Assay Kit (EpiZyme, China) was employed to determine the protein concentration. Equal quantities (25 μg) of protein samples in each well were separated on a 10 % sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE) and transferred to polyvinylidene fluoride membranes (PVDF) (Millipore, USA). The PVDF membranes were blocked with 5 % fat-free milk in Tris-buffered saline (TBS)/0.1 % Tween 20 at room temperature for 1 h, followed by overnight incubation at 4 °C with primary antibodies against SLC35F2 (1:400, PA5-42470, Invitrogen, USA) and GAPDH (1:5000, ET1601-4, HUABIO, China). On the following day, the membranes were washed and incubated with horseradish peroxidase-conjugated secondary antibody (1:50000, HA1001, HUABIO, China) for 1 h at room temperature. The immunoreactive bands were visualized using ECL Western blotting substrate (Pierce, Thermo Scientific, USA) and detected on a chemiluminescence imager (Bio-Rad ChemiDoc MP, USA).
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10

Comprehensive Protein Expression Analysis

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Antibodies against GAPDH (ET1601‐4, Huabio), AURKA (14475S, Cell Signaling Technology), PARP (9532S, Cell Signaling Technology), c‐Myc (AF6513, Beyotime), pH3S10 (9701S, Cell Signaling Technology), H3 (4499, Cell Signaling Technology), Bcl‐2 (15071, Cell Signaling Technology), CRBN (AF6564, Beyotime), cIAP1 (GTX110087, GeneTex), VHL (68547, CST), cyclin E1 (AF2491, Beyotime), cyclin B1 (AF1606, Beyotime), STAT5A (AF2038, Beyotime), NANOG (ab203919, Abcam), FOXM1 (AF6924, Beyotime), AURKB (GTX132702, GeneTex), TACC3 (AF1345, Beyotime), TPX2 (GTX115654, GeneTex), Phospho‐TACC3 (Ser558) (AF4506, Affinity Biosciences), and Phospho‐Aurora A (Thr288)/Aurora B (Thr232)/Aurora C (Thr198) (2914S, CST) were used for the Western blot analysis. PE antihuman CD34 (343506, Biolegend) and Alexa Fluor 700 antimouse/human CD11b (101222, Biolegend) were used for the flow cytometry analysis. AURKA (14475S, Cell Signaling Technology), α‐Tubulin (AT819, Beyotime), Alexa Fluor 488 goat antirabbit IgG (H+L) (A11034, Invitrogen), Alexa Fluor 546 goat antimouse IgG (H+L) (A11003, Invitrogen) were used for immunofluorescence assay.
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