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12 protocols using hepa1 6 cell line

1

Hepatoma Cell Line and Knockout Mice Protocol

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Male C57BL/6 (B6) and BALB/c mice were purchased from the National Laboratory Animal Center (Taiwan). IL-6 knockout mice on a C57BL/6J background (B6.129S2-Il6tm1Kopf/J) were purchased from Jackson Laboratory (Bar Harbor, ME, USA). All animal experiments were approved by the Institutional Animal Care and Use Committee of Chang Gung Memorial Hospital (IACUC permit number: 2014123001, date of approval on 1 March 2015). The Hepa 1-6 cell line, which is a mouse hepatoma cell line derived from ATCC CRL-1830 and obtained from the Bioresource Collection and Research Center (Hsinchu city, Taiwan), was used in this study.
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2

Establishment of Igfbp7 Overexpressing Hepa1-6 Cells

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Hepa-1-6 cell line (CRL-1830) was obtained from ATCC and was cultured as instructed. Mouse Igfbp7 (NM_001159518) expression plasmid was obtained from Origene Technologies, Inc. (MR222256). Hepa1-6 cells were transfected with 8µg of mIgfbp7 expression plasmid DNA and corresponding empty vector using FuGENE® HD transfection reagent at a ratio of 3.5:1 (reagent:DNA). Transfected cells were selected in 450µg/ml G418 for 4 weeks to establish BP7-OE pooled clone.
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3

Mitochondrial Membrane Potential Assay

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Experiments were performed using the Hepa1-6 cell line (# CRL-1830, ATCC). Cells were cultured in DMEM media with 10% fetal bovine serum (FBS), 1 g/L glucose, 2 mM glutamine, 100 units/mL penicillin, and 100 mcg/mL streptomycin and 30 μM oleic acid. After seeding, 30,000 cells per well in 96 well plates, and cells were incubated at 37 °C with 5% CO2 overnight to let the cells attach to the culture surface. Mitochondrial membrane potentials (μM) were assessed with a Tetramethylrhodamine (TMRE) fluorophore (Thermo Fisher Scientific, Waltham, MA, USA, # T669). Cells were treated with SIMR1281 for 24 h. Then, TMRE was added to the cells at 200 nM and incubated for 45 min at 37 °C. In separate control wells, incubation with FCCP (10 µM) for 30 min before the addition of TMRE was used as a positive control. Cells were washed once with PBS, and a fresh culture medium was added before measurement. TMRE fluorescence was measured at Ex/Em = 545/580 nm. Signals in the vehicle-treated and blank-well controls were used to normalize the results.
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4

Cell Culture Conditions for Hepa1-6, NIH/3T3, and Raw264.7

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Experiments were performed using a Hepa1-6 cell line (ATCC® CRL- 1830, VA, USA). Cells were cultured in DMEM/F12 medium (Gibco™, Waltham, MA, USA), 10% FBS (Gibco™), 1% penicillin and 1% streptomycin (10,000 U/mL, Gibco™) at 37 °C and under 5% CO2. Additionally, NIH/3T3 (ATCC® CRL- 1658) and Raw264.7 (ATCC® TIB-71) cells were used for the screening of DDX3 mRNA expression level. NIH/3T3 cells were cultured in DMEM/F12 medium (Gibco™), 10% FBS (Gibco™), 1% penicillin and 1% streptomycin (10,000 U/mL, Gibco™), while Raw264.7 were cultured in DMEM medium (Gibco™), 10% FBS (Gibco™), 1% penicillin and 1% streptomycin (10,000 U/mL, Gibco™) at 37 °C and under 5% CO2.
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5

Cell Line Characterization and Maintenance

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The Hepa1-6 cell line, which expresses high levels of miRNA199a, and HCC cell lines Hep3B, PLC/PRF/5, SKHep1, and SNU423 with miR199a downregulation were obtained from ATCC and maintained in DMEM media (Thermo Fisher Scientific, Scoresby, Australia) supplemented with 10% fetal bovine serum (FBS) (GIBCO, Australia) and 1% penicillin-streptomycin (P/S) (GIBCO, Australia). The Australian Genome Research Facility (AGRF) cell line ID service was used to confirm the identity of the human cell lines. Breast cancer cell lines T47D and MCF-7 were maintained in standard DMEM media. Melanoma cell lines 92.1 and Mel270 (gifted by Nicholas Hayward) and ovarian cancer lines SW626, CAOV3, and TOV21G were grown in RPMI media (Thermo Fisher Scientific) supplemented with 10% FBS and 1% P/S. Prostate cancer cell lines LnCap and DU145 were maintained in standard DMEM media. All the other cell lines were maintained as per the ATCC recommendations. Cryopreserved primary human hepatocytes (HUM4150) and NoSpin HepaRG (NSHPRG) cells were obtained from Lonza (Sydney, Australia) and maintained as per the manufacturer’s protocol.
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6

Hepa1–6 Cell Line Cultivation

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Mouse hepatoma Hepa1–6 cell line was purchased from ATCC, and cultured in Dulbecco’s modified Eagle’s medium (DMEM, 25 mM glucose, Gibco) equilibrated with 5% CO2 at 37 °C.
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7

Cell Line Maintenance for HCC and Colorectal Research

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The human HCC cell lines MHCC97L and HepG2, human colonic epithelial cell line NCM460, mouse HCC cell line H22, and Hepa1–6 cell line were maintained in Dulbecco’s modified Eagle’s medium (DMEM) with 10% fetal bovine serum (FBS) (Gibco by Life Technologies, Bleiswijk, the Netherlands). Human monocyte cell line THP-1 cells were cultured in RPMI 1640 with 10% FBS. Except Hepa1–6 cell line from American Type Culture Collection, the other cell lines were purchased from the Shanghai Cell Collection (Shanghai, China).
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8

Autophagy Regulation Pathways in Cell Lines

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HEPA 1–6 cell line and HepG2 cells were cultured as recommended by the American Type Culture Collection (Manassas, MA, USA). Rapamycin and Insulin were purchased from Sigma-Aldrich (St.Louis, MO, USA). Pertussis toxin was purchased from Calbiochem (San Diego, CA, USA). Antibodies for LC3, p-PI3K p85 (Tyr458)/PI3K, p-Akt/Akt, and p-mTOR/mTOR were from Cell Signaling (Danvers, MA, USA). Antibodies for Gαi3 and β-actin were from Santa Cruz Biotechnology (Dallas, TX, USA). Antibodies for Tnfaip8 were both produced using protein-specific synthetic peptides from AbFrontier (Seoul, South Korea) as described before7 (link) and purchased from Proteintech (Rosemont, IL, USA).
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9

Hepatocellular Carcinoma Cell Lines

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HCC cell lines SNU449 (RRID: CVCL_0454) and LM3 (RRID: CVCL_6832) were purchased from the Cell Bank of Chinese Academy of Sciences (Shanghai, China), and Hepa1–6 cell line was purchased from the American Type Culture Collection (ATCC, USA, RRID: CVCL_0327). Huh7 (RRID: CVCL_0336) and Huh7-derived RAPA resistant cells were kind gifts from Xiao Xu lab of Zhejiang University. All cell lines were authenticated by Short Tandem Repeat (STR) tests. Recent mycoplasma testing has been performed. Cells were cultured in DMEM (Thermo, USA) supplemented with 10% fetal bovine serum (FBS, Gibco, Australia) and further maintained at 37 °C under a humidified 5% CO2 condition.
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10

c-Met Targeted siRNA Knockdown

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All siRNA duplexes targeting c-Met (sense sequence: 5′-CCACGTGAACGCTACTTAT-3′), which were modified with 2′-ome, and the negative control siRNA (NCsiRNA: siN05815122147) were purchased from RiboBio Co. (Guangzhou, China). Fluorescent-labeled Cy5-NC siRNA was also obtained from RiboBio Co. and was synthesized via the modification of the 3′-end of the sense strand with fluorescein. Hepa1–6 cell line was purchased from American Type Culture Collection (ATCC, Manassas, VA, USA).
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