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14 protocols using anti mouse cd4 percp cy5

1

Treg/Teff Cell Staining and Analysis

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For Treg/Teff cell staining (Yang, et al., 2018 (link)), live/dead cells were first labeled with antibodies to distinguish living cells (Waltham, Ma, United States). The antibodies used included; anti mouse CD4 percp-cy5.5, anti-mouse cd45-bv510, anti-mouse IL-17A APC and anti-mouse IFN-γ PE, anti-mouse TNF-α Bv421, anti-mouse Foxp3 FITC (all from BioLegend). For Teff cells, cytokine staining analysis mainly containing Th17 and Th1, the cells mixed with acetate (50 ng/ml; Sigma-Aldrich), ionomycin (500 ng/ml; Sigma-Aldrich) and brefidine (1 µg/ml; Sigma-Aldrich) were cultured together and placed in 96 well plates with cytokine secretion blockers for 4 h. Stained cells were measured using BD LSR Fortessa flow cytometer (BD Biosciences) and data were obtained and were analyzed with Flowjo 10.0 (Flowjo company, United States).
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2

Flow Cytometric Analysis of Immune Cell Profiles

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Flow cytometry was used for analyzing the toxic effects of HCQ on lymphocytes with Zombie NIR™ Dye (Biolegend, San Diego, CA), and the frequencies of naïve CD4+T (CD4+CD62L+CD44-), Th1 (CD4+IFN-γ+), Th17 (CD4+IL-17A+), T regulator (Tregs) (CD4+CD25+Foxp3+) cells, and the expression of LOX-1 in RVECs. The cells were incubated with Fc block (clone 2.4G2, Bio Xcell) and stained with following antibodies from BioLegend: anti-mouse CD3 (BV421), anti-human CD3 (BV421), anti-human CD8 (PE), anti-human LOX-1 (APC), anti-mouse CD4 (Percp-cy5.5), anti-mouse CD25 (PE-cy7), anti-mouse CD44 (APC), anti-mouse CD62L (FITC), and anti-mouse CD69 (PE). For intracellular cytokine staining, the cells were stimulated with phorbol 12-myristate 13-acetate (PMA) (50 ng/mL; Sigma), ionomycin (500 ng/mL; Sigma), and Brefeldin A (1 µg/mL; Sigma) for 4–5 h. The The intracellular cytokines or transcription factor were stained with anti-human/mouse IFN-γ (BV786), anti-human/mouse IL-17A (BV650), and anti-human/mouse Foxp3 (FITC) after fixation and permeabilization. Data were analyzed using the FlowJo software 10.0 (Tree Star, Ashland, OR, USA).
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3

Flow Cytometric Isolation and Analysis of Murine Regulatory T-cells

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Total mesenteric lymph node cells of male C57BL/6 mice were isolated by pushing through a cell strainer. After fixation, permeabilization and washing, the cells were stained with anti-mouse CD4 PerCP/Cy5.5 (Biolegend 116012), anti-mouse CD45 BV650 (Biolegend 103151), anti-mouse TCR β chain PE/Cy7 (Biolegend 109222), anti-mouse CD8α BV510 (Biolegend 100752), anti-mouse Foxp3 BV421 (Biolegend 126419), the fixable viability dye eFluor780 (eBioscience 65-0865-14) and flow cytometrically measured using a LSR II Fortessa instrument followed by a detailed analysis using FlowJo software. For FACS-sorting of regulatory T-cells, mesenteric lymph node cells were stained with anti-mouse CD45 BV650 (Biolegend 103151), anti-mouse TCR β chain PE/Cy7 (Biolegend 109222), anti-mouse CD4 BV711 (Biolegend 100550), anti-mouse CD25 PE (Biolegend 101903), fixable viability dye eFluor780 (eBioscience 65-0865-14) and sorted on a FACS Aria. RNA of sorted cells was isolated using the RNeasy Mini Kit (Qiagen 74106), converted into cDNA, and subjected to TaqMan Real-Time PCR assay using the primers Mm03024075 (Hprt), Mm00475162 (Foxp3), Mm01178820 (Tgfb1) and Mm01288386 (IL10; all from Thermo Fisher Scientific). Samples were run on a Light Cycler 480 and normalized to the house-keeping gene Hprt.
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4

Quantification of CD4+ T Cell Proliferation

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Restimulated splenocytes were transferred to V-bottom plates and stained in DPBS for 10 min at RT with fixable viability dye eFluor 780 (1:5,000, eBioscience) and anti-mouse CD4 PerCp/Cy5.5 (1:200, BioLegend, SanDiego, USA, clone GK1.5) and finally analyzed on a Cytoflex S flow cytometer (Beckmann Coulter). Proliferating cells among live CD4+ T cells were identified by their reduced fluorescence on the eFluor 450 channel. Peptides were considered immunoreactive if the stimulation index (% proliferating cells stimulated with peptide/% proliferating cells without stimulation) was >2.
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5

Multiparametric Flow Cytometry of CD4+ T Cells

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To test the CD4+ lymphocytes, LIVE/DEAD (Thermo Fisher Scientific, Waltham, MA, USA) was first labeled to distinguish the living cells. Surface marker antimouse CD4 and CD45 were labeled to all the cultured cells. After further fixation and permeabilization were performed for intracellular staining, intracellcular inflammatory cytokines were labeled and evaluated using an LSRFortessa (BD Biosciences). The following antimouse antibodies used for the cytometry analysis were purchased from BioLegend (San Diego, CA, USA) or Abcam (Cambridge, MA, USA) including antimouse CD4 Percp-cy5.5 (Biolegend), antimouse CD45 BV510 (Biolegend), antimouse IL17A APC (Biolegend), antimouse IFN-γ PE (Biolegend), antimouse TNFα BV421 (Biolegend), antimouse Foxp3 FITC (Biolegend), antimouse pPI3K PE (Biolegend), antimouse pAKT APC (Biolegend), antimouse FoxO1 (Abcam), and antimouse pFoxO1 (Abcam). SC79 (Selleck Chemicals, Houston, TX), as an AKT activator, was also used to stimulate the cells isolated from the DLNs and spleens of the EAU group to further determine whether the PI3K/AKT/FoxO1 pathway was involved in the mechanism of apremilast treatment on EAU. All the figures and data were collected and analyzed with FlowJo software (Tree Star, Ashland, OR).
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6

Quantification of Regulatory T Cells

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Splenocytes suspension was adjusted to 1×106 cells/100 µl staining buffer. The
cells were stained with anti-mouse CD4-PerCP-Cy5.5, CD8-Alexa Fluor 488, CD25- APC,and
Foxp3-PE (BioLegend, USA). For the analysis of regulatory CD4+ T cells, the cells were
treated by fixation/ permeabilization solution (Biolegend, USA) according to the
manufacturer’s instructions. The incubation time was 30 minutes at 4° C. All lymphocytes
subsets were analyzed by FACS Calibur instrument (Becton Dickinson, USA). The flow
cytometer data analyses were done using the FlowJo software version 7.6.1 (Tree Star,
USA).
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7

Multiparametric Flow Cytometry Analysis

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The tumor and spleen were made single cell suspension and passed directly through a 70 mm nylon cell filter (Corning). The cells were washed with flowing buffer (0.1% BSA in PBS) and incubated with Zombie NIRTM Fixable Viability Kit (Biolegend, 1:100) for 20 minutes at room temperature and then cells were stained with extracellular antibodies: anti-mouse CD3 FITC, anti-mouse CD8a APC, anti-mouse CD4 PerCP/Cy5.5, anti-mouse CD45 Brilliant Violet 510TM, anti-mouse CD 279 (PD-1) (Biolegend) and then intracellular staining: FoxP3/T-bet/IFN-γ/granzyme B (GZMB) after fixation and permeabilization according to the manufacturer’s protocol. All data were collected on a flow cytometer (BD Biosciences) and analyzed using FlowJo v10 software.
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8

Immune Cell Profiling of Mouse Tumor Samples

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The mouse tumor was cut into 2- to 3-mm pieces to make a single cell suspension. The tumor and spleen were mechanically macerated and passed directly through a 70-mm nylon cell filter (Corning). The cells were washed with flowing buffer (0.1% BSA in PBS) and incubated with Zombie NIRTM (Biolegend, 1:100) for 20 min at room temperature, and then cells were stained with extracellular antibodies: anti-mouse CD3 FITC, anti-mouse CD8a APC, anti-mouse CD4 PerCP/Cy5.5, anti-mouse Ly-6G/Ly-6C (Gr-1) PE/Cy7, anti-mouse CD11b PE, anti-mouse CD 279 (PD-1) Brilliant Violet 421TM or anti-mouse CD45 Brilliant Violet 510TM (Biolegend). For intracellular staining, cells were stained using the FoxP3/T-bet/IFN-γ/granzymeB (GrzmB) staining buffer set (Biolegend) for fixation and permeabilization after completion of extracellular staining according to the manufacturer’s protocol. Cells were then stained with Biolegend’s anti-mouse FoxP3 PE, anti-mouse T-bet PE/Cy7, anti-mouse GrzmB FITC or anti-mouse IFNr bright purple 510TM. All data were collected on a flow cytometer (BD Biosciences, Canto II) and analyzed using FlowJo v10 software (Tree Star, Inc.)
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9

Multiparameter Flow Cytometry Analysis

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HLJD decoction was prepared as above and stored at − 20 °C. The following flow cytometric antibodies were obtained from Biolegend (San Diego, CA, USA): anti-mouse CD45-APC/Cy7 (Cat#157,617), anti-mouse F4/80-PE (Cat#123,110), anti-mouse CD11b-FITC (Cat#101,206), anti-mouse CD11c-PE/Cy7 (Cat#117,318), anti-mouse CD8a-FITC (Cat#155,004), anti-mouse CD4 PerCP/Cy5.5 (Cat#100,434) and anti-mouse CD3ε-PE/Cy7 (Cat#155,706). Fixable Viability Stain (FVS) 700 was purchased from BD Bioscience (San Jose, CA, USA, Cat#564,997). Primary antibody against mouse TLR7 was purchased from Proteintech (Wuhan, China), and secondary antibodies and DAPI were obtained from Servicebio (Wuhan, China). ROS staining solution (Cat#D7008) was purchased from SIGMA (St. Louis, MO, USA). Mouse anti-PD-1 antibody and anti-CTLA-4 antibody were purchased from Bioxcell (Lebanon, NH, USA).
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10

Flow Cytometry for Immune Cell Analysis

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Flow cytometry was performed as previously described (Lewis et al. 2011 (link)). The following antibodies were utilized in this study: Anti-mouse CD4-PerCp-Cy5.5 (1:200; Biolegend), and Anti-mouse IFN-γ-FITC (1:100; BD Biosciences).
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