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5 protocols using criterion xt gel

1

Protein Fractionation and Analysis

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Adult female lysate (450 μg) was separated into eight molecular weight fractions (5–150 KDa) using a GELFrEE 8100 fractionation system with an 8% cartridge (Expedeon, San Diego, CA) (43 (link), 44 (link)). Protein fractions were precipitated using an acetone-based method and re-solubilized in 100 mm Tris-HCL pH 8.5. The protein and peptide quantities were determined using the Advanced Protein Assay kit (Cytoskeleton, Inc., Denver, CO) and a Qubit® 3.0 Fluorometer. The fractionation was also assessed using SDS-PAGE in MES running buffer (4–12% Criterion XT gels, BioRad, Hercules, CA). The highest molecular weight fraction (>120- KDa) did not contain detectable protein and was not analyzed further. The proteins in GELFrEE fractions (∼20–120 μg) were precipitated twice using 3× volumes of cold acetone.
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2

Western Blot Analysis of ER-α, HER-2, and β-Actin

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Tissue lysates containing a total of 40ug proteins were loaded on Criterion XT Gels (Bio-Rad). SDS-PAGE Electrophoresis was performed in XT-MOPS running buffer (Bio-Rad), and afterward, proteins were transferred into Immun-Blot PVDF Membranes (Bio-Rad). After blocking with 5% skim milk at room temperature for 1 h, membranes were incubated with primary antibodies at 4°C overnight. The primary antibodies against Estrogen receptor α, Her-2 and β-Actin (Cell Signaling Technology) were diluted 1:1000 with tris-buffered saline containing 1% Tween 20 (TBST). Incubation with secondary horseradish peroxidase-conjugated anti-rabbit antibody (Cell Signaling Technology) in 1:3000 dilution was performed at RT for 1h. The chemiluminescence detection was performed with Pierce ECL Plus Western Blotting Substrate (Thermo Fisher Scientific) and detected with Amersham Imager 600 (GE Healthcare, UK).
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3

Western Blot Analysis of Insulin Signaling

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Muscle and liver samples were lysed, and the proteins were separated by SDS polyacrylamide gel electrophoresis on 4–12% Criterion XT gels (BioRad) and then transferred to nitrocellulose membranes (Schleicher & Schuell). After blocking, the membranes were probed with mouse antibodies diluted 1/1000 in milk. The antibodies used were against: p(Ser473)Akt, Akt, p(Ser536)NFκB p65, p(Ser176/180)IKKα/β p(Ser9)GSK-3β and β-actin (Cell Signaling Technology). Antibody binding was revealed with a peroxydase-coupled secondary antibody diluted in milk, detected using the Amersham ECL Plus reagent (GE Healthcare) and quantified by Image Quant TL software (GE Healthcare Bio-sciences). The membranes were stripped and re-probed with the anti-β-actin antibody as a control for loading. Insulin signaling molecule phosphorylation was performed in stimulated state after an euglycemic hyperinsulinemic clamp procedure.
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4

Western Blot Analysis of Rat Colonocytes

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Isolated rat colonocytes were lysed in RIPA buffer containing a protease inhibitors cocktail (Roche). Total protein extracts (30 μg) were loaded into 4–12% Criterion XT gel (Bio-Rad) before electrophoresis in MOPS buffer (Bio-Rad). After transfer on nitrocellulose membrane and incubation in blocking solution (TBS pH 7.5, 0.05% Tween 20 and 5% (weight:volume) BSA, membranes were incubated overnight (4 °C) with a primary antibody directed against activated-caspase 3 (Abcam 2303, rabbit, 1/1000) or proliferating cell nuclear antigen (PCNA, Abcam 29, mouse, 1/1000) or claudin-1 (Invitrogen, 717800, rabbit, 1/250) diluted in the blocking solution. After washes, blots were incubated for 2 h at room temperature with an anti-rabbit or anti-mouse HRP-linked secondary antibody (Jackson Immuno Research Laboratories, 1/5000) or a goat anti-actin-HRP (Santacruz Biotechnologies C-11, 1/1000) diluted in the blocking solution. After 3 washes, detection was performed by chemiluminescence using Clarity Western ECL substrate (Biorad) and the FluorChemFC2 device with AlphaView software (Cell Biosciences).
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5

Western Blot Analysis of Rat Liver Proteins

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Rat liver tissue was homogenized in RIPA lysis buffer containing protease and phosphatase inhibitors (Roche). The protein concentration was determined using Micro BCA (Pierce) according to the manufacturer's protocol. For all of the blots except acetyl-CoA carboxylase (ACC), 30 μg of protein was separated using a 4–12% Criterion XT gel (Bio-Rad). For ACC, 10 μg of protein was separated using a 3–8% tris-acetate Criterion XT gel (Bio-Rad). Protein was transferred using a Bio-Rad Western blotting transfer system at 100 V for 1 hr onto nitrocellulose membranes. The membranes were blocked using SuperBlock T20 Tris-buffered saline (TBS) blocking buffer. Primary antibody incubations were diluted as indicated in Supplemental Table 4 in Tris-buffered saline with 0.1% Tween 20 (TBST) with 3% non-fat dry milk except for the ACC antibody, which was incubated in 5% BSA in TBST overnight. The membranes were washed in TBST and incubated with the appropriate secondary antibody at the indicated dilutions (Supplemental Table 4) in TBST with 3% non-fat dry milk or 5% BSA for 1 hr. The membranes were incubated with enhanced chemiluminescence Western blotting substrate and bands were visualized using a Fujifilm LAS 4000 imager (Fujifilm) and Multi Gauge V3.2 software (Fujifilm).
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