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35 protocols using spectronic 200

1

Antioxidant Capacity of Compounds

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The antioxidant capacity of compounds 1-3 was assessed using the ABTS and FRAP (ferric reducing antioxidant power) assay and expressed in mg vitamin C equivalents (VCE)/g of compound. The ABTS radical solution was adjusted to an absorbance of 0.650 ± 0.020 at 734 nm using a spectrophotometer (SPECTRONIC 200; Thermo Fisher Scientific Inc.). The reaction between ABTS radicals and the appropriately diluted samples was allowed to proceed at 37 °C for 10 min, and then the decrease in absorbance of the resulting solution was measured at 734 nm using a spectrophotometer (SPECTRONIC 200; Thermo Fisher Scientific Inc.).
The antioxidant capacity using FRAP assay, FRAP reagent solution was prepared by mixing 0.3 M sodium acetate buffer solution (pH 3.6), 10 mM TPTZ in 40 mM HCl, and 20 mM FeCl 3 •6H 2 O at a ratio of 10:1:1. The reactions between the 950 μL of FRAP reagent solution and 50 μL of diluted samples were reacted for 30 min at room temperature, and then the absorbance at 593 nm was immediately measured by a spectrophotometer (SPECTRONIC 200; Thermo Fisher Scientific Inc.).
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2

Optimizing Bartonella Growth Medium

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During a co-culture study, we observed growth of B. henselae in an in-house Borrelia liquid medium and investigated this medium in further as a potential growth medium for Bartonella species. For all growth experiments, a basic medium (Table 1) was used which derived from this Borrelia liquid medium. In order to improve the growth-promoting characteristics of the new medium, we tested several supplements which due to literature affect the growth of Bartonella species (Chenoweth et al. 2004 (link); Riess et al. 2008 (link); Sander et al. 2000 (link)). These tests included the carbohydrates mannose, galactose, glucose, fructose, and sucrose as sources of energy and other supplements such as hemin (Sigma-Aldrich). The combinations of the basic medium with the different supplements were tested by counting CFU and measuring the absorbance at 600 nm (A600; Spectronic 200, Thermo Scientific and Lambda 25, Perkin Elmer).

Composition of the basic medium

Inorganic salts(mg/L)
Calcium chloride anhydrous600
Potassium chloride1600
Potassium dihydrogen orthophosphate500
Magnesium sulfate3000
Sodium chloride2500
Sodium bicarbonate500
Disodium phosphate (Na2HPO4)650
Other components
 Malic acid50
 Succinic acid600
 α-Ketoglutaric acid300
Fetal calf serum10 % (v/v)
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3

Quantifying Phosphate Solubilization Potential

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The phosphate solubilization ability was evaluated by cultivating the strains in TSB medium and incubating at 30 °C for 24 h, adjusting the cell suspensions until an O.D.600nm of 1.0 was reached. Fifty-milliliters of glucose extract of yeast phosphate (GELP) broth, containing the required source of insoluble phosphate (Tricalcium phosphate), was inoculated with 1 mL of pre-inoculum, then incubated at 28 °C for 5 days with agitation at 130 rpm [80 (link)]. Finally, the supernatant was obtained by centrifugation at 13,500 rpm for 5 min (Mikro200 Hettich, Tuttlingen, Germany) and, with the help of a potassium phosphate standard curve (0.5–500 µg mL−1) (Merck ®, Darmstadt, Germany), the presence of quantified soluble phosphate was measured using the phosphomolybdate method [81 (link)], in which a blue complex develops, and its absorbance measured at 655 nm (Thermofisher, Spectronic 200, Suwa, Japan). Soluble phosphate values were expressed in µg mL−1 or mg L−1 [51 (link)]. The control strain Rhizobium tropici CIAT 899 was used to solubilize tricalcium phosphate, aluminum phosphate, and iron phosphate.
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4

Quantification of Total Phenolics in PAC

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The concentration of the total phenolic compounds in the PAC was quantified via microscale Folin–Ciocalteu colorimetry [101 ]. The procedure was scaled down to 1.5-mL cuvettes by halving the reaction volume. Hence, 10 µL of sample was added to a mixture of 0.79 mL of ultrapure water and 50 µL FC reagent. After vortexing the mixture was incubated for 5 min and 150 µL of 25% (w/v) sodium carbonate were added into the cuvettes. The solution was thoroughly mixed by vortexing again and incubated for 1 h at room temperature. The measurement was performed at 765 nm using a spectrophotometer (Spectronic 200, Thermo Scientific) and the amount of total phenolics was determined as gallic acid equivalents via a gallic acid calibration curve ranging from 0.05 to 1 g/L. Like the laccase samples, the single calibration points were prepared as 1:10 dilutions in 10% acetic acid to compensate for possible side reactions of the acetic acid with the FC reagent.
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5

Quantifying Indolic Compound Production

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The production of indolic compounds was determined by growing the strains overnight in 2 mL of TSB medium and incubating them at 30 °C [76 (link)]. The strains were inoculated in tubes containing 5 mL of TSB medium supplemented (150, 300, and 600 μg mL−1) or not supplemented with tryptophan (HI-media®, Maharashtra, India). The tubes were incubated at 30 °C at 180 rpm for 24 h. The fermented broth was centrifuged at 13,000 rpm for 3 min (Mikro200 Hettich, Tuttlingen, Germany). The supernatant was used to quantify the production of indolic compounds, mixing in triplicate in 0.5 mL of Salkowsky’s reagent [77 (link)] and 0.5 mL of supernatant, which were mixed by inversion and incubated in the dark for 20 min at room temperature. Following this, the absorbance at 535 nm was determined using a spectrophotometer (Thermofisher, Spectronic 200, Suwa, Japan), with a standard curve configured using indole acetic acid (50–1000 µg L−1) (Hi-media®, Maharashtra, India) and 0.5 mL of culture medium plus 0.5 mL of Salkowski’s reagent as a control. The results are expressed as μg IAA mL−1.
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6

Colloidal Stability and Hemolysis Analysis of LDNLC

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For colloidal stability test, the freshly prepared LDNLC were diluted with PBS (pH 7.4) at the volume ratio of 1:10. The change in particle size was recorded at predetermined time intervals (3, 6, 9, 12, 24, 36, and 48 h) for up to 48 h. For hemolysis assay, red blood cells (RBCs) were first obtained from a New Zealand rabbit and diluted to 2% suspension with saline solution. LDNLC was added into 2% RBCs suspension with the same volume to achieve the designated concentrations (0.1, 0.25, 0.5, 0.75, and 1 mg/mL) and incubated at 37°C for 1 h. In addition, RBCs suspension was also incubated with saline and distilled water under the same conditions as negative (0% hemolysis) and positive controls (100% hemolysis), respectively. After that, all the samples were centrifuged at 3,000 rpm for 10 min, and the absorption values of the same volume of supernatants which represented the counts of released hemoglobin were measured by a UV spectrophotometer (SPECTRONIC 200; Thermo Fisher Scientific, Waltham, MA, USA).26
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7

Spectroscopic Analysis of MWCNTS

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MWCNTS were diluted to the indicated concentrations in 500 μL of a 1:1 PBS:CellTiter-Glo® solution and transferred to a glass cuvettes. Absorbance measurements were taken at 700 nm using a Spectronic 200 (ThermoScientific) spectrophotometer.
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8

Quantification of Total Polyphenols by Folin-Ciocalteu

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The Folin–Ciocâlteu (F–C) method was utilized to determine the total polyphenols content [12 (link)]. The dried material was grounded in an analytical mill (IKA A11 basic, IKA Werke GmbH & Co. KG, Staufen, Germany), and 0.3 g of the powder was weighed into glass beakers, adding 20 mL of 80% ethanol solution (Avantor Performance Materials, Gliwice, Poland) [23 (link)]. The solution was slightly heated for 3 min, not allowing it to boil, filtered and made up to 50 mL. 0.18 mL of extract was placed in glass tubes and diluted with 4.92 mL of distilled water; afterward, 0.3 mL of F–C reagent (Merck, Darmstadt, Germany) was added and mixed. After 3 min, the pH of the solution was changed by adding and mixing 0.6 mL of supersaturated sodium carbonate solution (Avantor Performance Materials, Gliwice, Poland). The incubation was carried out in the darkness at 25 °C for an hour. The absorbance of the solutions was measured using a spectrophotometer (Spectronic 200; Thermo Fisher Scientific Inc., Waltham, MA, USA) at a wavelength of 750 nm against a blank sample. The content of polyphenols was calculated as gallic acid equivalent (mg GAE/100 g dm) with the calibration curve in the range of 1–5 mg/mL. The analysis was conducted three times.
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9

Antioxidant Capacity Evaluation Protocols

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Antioxidant capacities were determined using the 2,2′-azino-bis(3-ethylbenzothiazoline-6-sulfonic acid) (ABTS) and 2,2-diphenyl-1-picrylhydrazyl (DPPH) radical scavenging assays [16 (link),17 (link)]. Briefly, the ABTS radical solution was adjusted to an absorbance of 0.650 ± 0.020 at 734 nm. Reactions between the ABTS radical solution and the diluted compound 17 (satisfying the standard curve range) were allowed to proceed at 37 °C for 10 min, and decreases in the absorbance of the resulting solution were measured using a spectrophotometer (SPECTRONIC 200; Thermo Fisher Scientific Inc., Waltham, MA, USA). For the DPPH assay, the absorbance of DPPH radicals in 80% (v/v) aqueous methanol was set to 0.650 ± 0.020 at 517 nm. Reactions between the DPPH radical solution and the diluted compound 17 (satisfying the standard curve range) were allowed to proceed at ambient temperature for 30 min. Decreases in the absorbance of the resulting solution were monitored at 517 nm using a spectrophotometer (SPECTRONIC 200). Antioxidant capacities were expressed as mg vitamin C equivalent (VCE)/100 mg.
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10

Probiotic Strains Cultivation Protocol

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The commercial strains BB12 and LA5 were obtained from ATCC. Both probiotic strains Bifidobacterium animalis ssp. lactis ATCC 27536 (BB12) and Lactobacillus acidophilus ATCC 4356 (LA5) were cultured in MRS (De Man, Rogosa, and Sharpe) broth (BD DifcoTM, Fisher Scientific, Waltham, MA, USA) with the incubation conditions of 37 ℃, 72 h in an anaerobic jar using gaspak sachets (BDTM Fisher Scientific, USA). After the activation and three sub-culturing steps, the cells were collected using centrifugation (1000× g for 15 min at 4 °C). The supernatant was removed, followed by 2–3 washings with the isotonic PBS solution (pH 7.2) to get the bacterial cells of BB12 and LA5. The cell concentration was further optimized at 0.8–0.9 OD, 600 nm using a spectrophotometer (Spectronic 200, ThermoFisher Scientific, Madison, WI, USA) to spike the conjugated solution at a concentration of 9–10 logs CFU/mL. The cell suspensions of BB12 and LA5 were held at 4 °C for inoculation in the conjugated whey protein hydrolysate solution.
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