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13 protocols using rabbit anti ki67 primary antibody

1

Quantifying Intestinal Crypt Cell Proliferation

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Crypt cell proliferation was assessed through immunohistochemistry of paraffin-embedded intestinal sections as previously described31 (link) using a rabbit anti-Ki-67 primary antibody (Abcam) and Alexa-Fluor-conjugated donkey anti-rabbit secondary antibodies (ThermoFisher Scientific, Waltham, MA). Sections were counterstained and mounted using Fluoroshield with DAPI (Sigma-Aldrich, St. Louis, MO). Stained sections were examined with confocal microscopy (LSM 800, Zeiss, Jena, Germany) at 20x magnification. Within each sample, Ki-67 positive cells in 8–10 intact well-oriented crypts were counted using ImageJ v1.53a (National Institutes of Health, Bethesda, MD) and averaged16 (link).
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2

Isolation and Characterization of Murine Islet Cells

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Culture media and supplements, collagenase type XI, histopaque-1077, DMSO, EDTA, IBMX, carbachol, clonidine, LiCl, exendin-4, forskolin, agarose, bionic buffer and BSA were obtained from Sigma-Aldrich (Dorset, UK). DNeasy Blood and Tissue, RNeasy Mini and QuantiTect SYBR Green PCR kits and qPCR primers for mouse and human CB1 (CNR1), GPR119, GPR18, GPR92 (LPAR5), delta-opioid receptor (OPRD1), transient receptor potential cation channel subfamily V member 1 (TRPV1), GPR3, GPR6, GPR12, and ACTB were from Qiagen (Manchester, UK). PCR primers for Gpr55 genotyping were from Eurofins Genomics (Wolverhampton, UK). SR141716A was from Tocris Bioscience (Abingdon, UK). AM251 and rabbit anti-Ki67 primary antibody were from Abcam (Cambridge, UK). cAMP HiRange and IP-one (IP1) assays were from Cisbio (Codolet, France). TaqMan RT-PCR kit, 100 base pairs (bp) DNA ladder, SYBR® DNA gel stain, HEPES, HBSS and DAPI were from Thermo Fisher Scientific (Paisley, UK). Caspase-Glo 3/7 and GoTaq® G2 Green Master Mix were from Promega (Southampton, UK). Recombinant TNFα, IFNγ and IL-1β were from PeproTech EC (London, UK). Guinea pig anti-insulin was obtained from Dako (Cambridge, UK). AlexaFluor 488- and AlexaFluor 594-conjugated secondary antibodies were from Jackson ImmunoResearch Laboratories (Newmarket, UK).
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3

Immunohistochemical Analysis of Cryopreserved Tumors

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Cryoprotected tumour samples (sequential overnight incubations in 4% paraformaldehyde, 10% sucrose, 30% sucrose) were embedded and frozen in optimal cutting temperature embedding compound (VWR International). Samples were sectioned (12 µm, LEICA CM1950 cryostat) onto SuperFrost Plus™ Adhesion slides (Thermo Scientific, Waltham, MA) and immunohistochemistry performed using a rabbit anti-Ki67 primary antibody (1:500; Abcam AB15580) with an Alexa-568-conjugated goat anti-rabbit secondary antibody (1:500; Invitrogen). Sections were mounted in Prolong Gold with DAPI (Invitrogen) and scanned (Zeiss AxioScan.Z1 slide scanner, ×20 magnification).
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4

Intestinal Crypt Cell Proliferation Assay

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Crypt cell proliferation was assessed through immunohistochemistry of paraffin-embedded intestinal sections as described31 (link) using a rabbit anti-Ki-67 primary antibody (Abcam) and Alexa-Fluor-conjugated donkey anti-rabbit secondary antibodies (ThermoFisher Scientific). Sections were counterstained and mounted using Fluoroshield with DAPI (Sigma-Aldrich). Stained sections were examined with confocal microscopy (LSM 800, Zeiss) at 20x magnification. Within each sample, Ki-67 positive cells in 8 to 10 intact well-oriented crypts were counted using ImageJ v1.53a (National Institutes of Health) and averaged.16 (link)
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5

Quantifying Cell Proliferation in Wound Healing

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To detect the effects of the four treatments on cell proliferation at the wound site, immunofluorescence of the wound sections was performed on day 7. After conventional dewaxing, hydration, antigen recovery, and blocking, the cells were incubated with rabbit anti-Ki67 primary antibody (1:800, Abcam, USA) and then with goat anti-rabbit IgG Alexa Fluor® 594-conjugated secondary antibody (1:400, Abcam, USA) and DAPI. The stained sections were imaged at 20X on a fluorescence microscope, and 5 randomly selected regions in each sample were analyzed. Then, Image-Pro Plus software was used to calculate the percentage of positive cells in each group.
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6

Immunofluorescence Staining for Liver Markers

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Histological sections were permeabilized in 0.1% Triton v/v, 3 times for 5 min each and blocked in PBS-3% BSA w/v for 1 h and incubated with rabbit anti-Ki67 primary antibody (Abcam, Cambridge, UK), rabbit anti-α-Fetoprotein (α-FP) or rabbit α-smooth muscle actin (α-SMA) (all purchased from DAKO-Agilent, Santa Clara, CA, USA). After overnight incubation at 4 °C, sections were washed in PBS and incubated with Alexa Fluor 568 or Alexa Fluor 488 secondary antibody (ThermoFisher scientific, Waltham, MA, USA) for 1 h at room temperature and when specified stained also for TUNEL. Following extensive washes in PBS, the sections were counterstained with DAPI and mounted with PBS-50% v/v Glycerol. Images were acquired by a Nikon Eclipse Ti-S microscope equipped with a Photometric CoolSNAP EZ turbo 1394 camera.
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7

Quantifying Cell Proliferation with Ki67

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We used Ki67 as a marker, since this is a nuclear protein known to be expressed when cells are proliferating but which remains inactive when cells enter the G0 phase of the cell cycle (74 (link)– (link)76 (link)). The NHDF (3.5 × 103 cells per well) were cultivated for 48 h with or without DCA in 96-well plates and were fixed using a 4% paraformaldehyde solution. Subsequently, the cells were permeabilized in 0.5% Triton X-100 in PBS and blocked with 1% bovine serum albumin (BSA) in PBS. The cells were further incubated with rabbit-anti Ki67 primary antibody (Abcam, MA, USA) and detected using Alexa Fluor 488-conjugated goat anti-rabbit antibody (Invitrogen, CA, USA). Nuclear DNA was stained with 4′,6′-diamidino-2-phenylindole (DAPI). The images were obtained using the Leica DM6000 fluorescence microscope, and 60 pictures of each cultured condition per well were taken and analyzed using the ImageJ software, which quantifies the Ki67- and DAPI-positive stained cells.
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8

Isolation and Characterization of Pancreatic Cells

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Culture media and supplements, collagenase type XI, histopaque-1077, DMSO, EDTA, IBMX, carbachol, clonidine, Accutase, Fura-2 AM, tolbutamide, LiCl, exendin-4, forskolin, agarose, bionic buffer, and BSA were obtained from Sigma-Aldrich (Dorset, UK). JTE 907 was from Tocris Bioscience (Abingdon, UK). Rabbit anti-Ki67 primary antibody was from Abcam (Cambridge, UK). cAMP HiRange and IP-one (IP1) assays were from Cisbio (Codolet, France). HEPES, HBSS, and DAPI were from Thermo Fisher Scientific (Paisley, UK). Caspase-Glo 3/7 was from Promega (Southampton, UK). Recombinant TNFα, IFNγ, and IL-1β were from PeproTech EC (London, UK). Guinea pig anti-insulin was purchased from Dako (Cambridge, UK). Alexa Fluor 488- and Alexa Fluor 594-conjugated secondary antibodies were from Jackson ImmunoResearch Laboratories (Newmarket, UK).
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9

Quantitative Ki-67 Expression Analysis

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IHC was performed to detect Ki-67 expression in the xenograft tumors as described previously [38 (link)]. The primary rabbit anti-Ki-67 antibody and the secondary goat anti-rabbit IgG were purchased from Abcam (Cambridge, UK). Ki-67 expression was quantified using the Image-pro-plus (IPP) software (Media Cybernetics, Washington, USA).
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10

Immunohistochemical Staining of Lung Tissue

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Frozen lung sections were exposed to a 1:50 dilution of primary anti-luciferase antibody (Abcam, Cambridge, MA) in PBSTovernight. In caspase-3 staining, frozen lung sections were exposed to a primary rabbit anti-caspase-3 antibody (Abcam, Cambridge, MA) in PBST overnight. In Ki67 staining, frozen lung sections were exposed to a primary rabbit anti-Ki67 antibody (Abcam, Cambridge, MA) in PBST overnight. After washing, corresponding secondary antibody was used.
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