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7890 gc system

Manufactured by Agilent Technologies
Sourced in United States, Germany

The Agilent 7890 GC system is a gas chromatography instrument designed for analytical separation and detection of chemical compounds. It features a precision oven, advanced pneumatic controls, and a variety of detectors to optimize performance for a wide range of applications.

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22 protocols using 7890 gc system

1

GC/MS Analysis of Essential Oil Constituents

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We utilized a gas chromatography/mass spectrometry (GC/MS) to analyze and identify the EO constituents. The analysis was carried out on Agilent 5977A mass spectra data (MSD) and 7890 GC system, Chemetrix (Pty) Ltd, Agilent Technologies, DE (Germany), with a Zebron-5MS (ZBMS 30 m × 0.25 mm × 0.25 um) (5% - phenyl methyl polysiloxane). The temperature and column conditions were applied: the injector, source, and oven temperature set at 280°C, 280°C, and 70°C, respectively. GC grade helium at a flow rate of 2 mL/min and splitless 1 mL injection was used. The ramp settings were 15°C/min to 120°C, then 10°C/min to 180°C, then 20°C/min to 270°C, and held to for 3 min. Subsequently, identification of each constituent was ascertained using agreement of their MSD with the reference held in the computer library (Wiley 275, New York). Furthermore, matching the retention index of each compound with those in literature was also employed in identifying the compounds. The peak areas were used to obtain total percentage composition of oil.
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2

Volatile Profiling of Pearl Millet

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Samples for each pearl millet line were subject to Solid Phase Micro-Extraction Gas Chromatography with Electron Impact Ionization Mass Spectrometry (SPME-GC-EI-MS) after 21 day of accelerated storage from the 2019 experiment. Triplicate flour samples (0.5000 ± 0.0001 g) of each line were weighed into 20 ml amber headspace vials that were brought to room temperature before incubation at 35°C for 1 h. Analysis was performed on an Agilent 7890 GC system equipped with an Agilent 5977B detector and a Gerstel Multi-Purpose Sampler (MPS Robotic; Gerstel) with automated SPME sampling capability. MS data files were pre-processed and analyzed with Genedata Expressionist software version 14.51 (Asiago et al., 2012 (link)). Details on chromatography hardware parameters, software for processing and statistics is provided in Supplementary Methods (Appendix A).
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3

Plasma Fatty Acid Quantification

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Plasma fatty acids were measured in the same laboratory using the same protocol for the SP2 and SCHS study. Gas chromatography-tandem mass spectrometry conducted on an Agilent 7890GC system equipped with a 7001B QQQ triple quadruple mass detector (Agilent, Santa Clara, CA, USA) and an autosample injector was used to measure the plasma fatty acids of the participants. Total fatty acids including both free and esterified (TGs, phospholipids, cholesterol esters) fractions were measured. There were 19 plasma fatty acids measured including the six PUFAs that are the focus of our study: (LA, ALA, DGLA, AA, EPA, DHA). The within-batch coefficients of variation (CVs) ranged from 3.7% to 8.1%, whereas the between-batch CVs ranged from 7.8% to 16.8%.
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4

Spectral Analysis of Organic Compounds

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The ultra-violet spectra were recorded on a UV-1800 Shimadzu, UV-spectrophotometer, India. The compounds were visualized by ultra-violet irradiation at 254 and 366 nm. The IR affinity-1 fourier transform infrared spectrophotometer, Shimadzu, India was used for the measurement of the IR spectra. The 1H and 13C NMR spectra were recorded in Bruker’s advance-III 400 MHz, 500 MHz and 700 MHz spectrophotometer. The gas chromatography-mass spectroscopy was performed on Agilent’s (Agilent Technologies, Palo Alto, CA) 7890 GC system with 5975C inert XL EI/CI MSD with triple detector equipped with a firmware version A.01.13 and software driver version 4.01 (054) gas chromatography with FID. All the chemicals and reagents used were purchased from the Sigma Aldrich. The analytical grade organic solvents were utilized for the extraction and column chromatography. The adsorbent and silica gel 60–120 mesh were purchased from the Himedia, India for the column chromatography.
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5

Metabolomics Analysis by GC-MS

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Metabolomics analyses were performed using gas chromatography–mass spectrometry (GC–MS) as previously described75 (link). Briefly, serum samples were collected from animals at the time of death. A total of 25 µl of serum was mixed with 200 µl of 100% ice-cold methanol. Norvaline and D27-myristic acid were used as spike-in controls. The samples were frozen for at least 24 h at –80 °C. The mixture was centrifuged (20,000g, 4 °C, 5 min), and the supernatant was kept for analysis. For measurement, the supernatant was dried in a speed-vac (room temperature), and samples were resuspended in 10 µl of pyridine with 10 mg ml−1 methoxyamine and incubated for 1 h at 30 °C. Samples were centrifuged (20,000g, 3 min), and the supernatant (7.5 µl) was transferred to GC–MS tubes. Subsequently, metabolites were derivatized by the addition of 15 µl of N-(tert-butyldimethylsilyl)-N-methyl-trifluoroacetamid with 1% tert-butyldimethylchlorosilane (Sigma-Aldrich, 375934) and incubation for 60 min at 80 °C. Metabolites were measured using a DB5-MS GC column in a 7890 GC system (Agilent Technologies) combined with a 5977 MS system (Agilent Technologies).
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6

Tracing Metabolism in Activated T Cells

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To measure [13C]glucose and [13C]glutamine tracing, CD4+ TN cells were cultured and activated as described followed by incubation with fresh RPMI medium containing 11 mM [13C]glucose or 2 mM [13C]glutamine for the indicated periods of time. Cells were collected, processed for metabolome extraction and dried by SpeedVac. Dried metabolite extracts were resuspended in pyridine and derivatized with methoxyamine (sc-263468 Santa Cruz Bio) for 60 min at 37 °C and subsequently with N-(tert-butyldimethylsilyl)-N-methyl-trifluoroacetamid, with 1% tert-butyldimethylchlorosilane (375934 Sigma-Aldrich) for 30 min at 80 °C. Isotopomer distributions were measured using a DB5-MS GC column in a 7890 GC system (Agilent Technologies) combined with a 5977 MS system (Agilent Technologies). Data processing, including correction for natural isotope abundance was performed by an in-house R script (https://gitlab.gwdg.de/joerg.buescher/metabolomics_scripts).
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7

Detailed Nutrient Analysis of SBO

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The fat, protein, ash, and moisture content of the raw materials were measured using official AOAC methods (AOAC 2000). Fatty acids (FAs) of the SBO were determined according to the method of AOAC 969.33 (2000) by Gas chromatography (7890 GC system, Agilent Technologies Inc., Santa Clara, CA, USA). The initial amount of starch in the samples was evaluated using an analytical kit for total starch.
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8

GC-TOF-MS Analysis of Derivatives

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A 7890 GC system (Agilent Technologies, Santa Clara, CA, USA) coupled with a Pegasus HT time-of-flight mass spectrometer (Leco, St Joseph, MI, USA) was used to analyze the derivative samples. Samples (1 µL) were injected in splitless mode with helium as the carrier gas at a constant flow rate of 1 mL/min, and then separated with an HP5 MS fused-silica capillary column (30 m × 0.25 mm × 0.25 μm; Agilent). The initial column temperature was set at 50°C for 1 minute, raised to 330°C at a rate of 10°C/minute, and then held at 330°C for 5 minutes. Temperatures for the inlet, transfer line, and ion source were 280°C, 280°C, and 250°C, respectively. Ionization was achieved in electron-impact mode at 70 eV. MS data were obtained in full-scan mode across a mass:charge ratio of 30–600 at a rate of 20 spectra per second after a solvent delay of 366 seconds.
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9

GC-MS Analysis of Derivatized Samples

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GC-MS analysis was conducted on an Agilent 7890 GC system coupled with an Agilent 5975C mass analyzer (Agilent, Palo Alto, USA). Chromatographic separation was carried on an Agilent DB-5MS capillary column (30 m × 0.25 mm ID × 0.25 μm film thickness). One microliter of the derivatized sample or reference standard was injected in the splitless mode. Helium was used as carrier gas with flow rate of 1.5 mL/min. The temperatures of inlet, transfer line, and ion source were maintained at 250, 300, and 230°C, respectively. The GC temperature programming was set to 4 min isothermal heating at 60°C, followed by the first ramp at 6°C/min to 150°C and holding for 8 min, second ramp at 8°C/min to 280°C and holding for 10 min, and third ramp at 12°C/min to 320°C. Mass was in the electron impact mode at 70 eV and in the full-scan monitoring mode from m/z 35 to 750. The 1701EA station software (Agilent, Palo Alto, USA) was used to acquire chromatogram and detect mass spectral peaks.
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10

Quantification of Plasma PUFA by GC-MS/MS

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Plasma n-3 and n-6 PUFA were quantified from baseline specimens prior to CAD events, in a targeted mode using gas chromatography–mass spectrometry (GC-MS)/MS on an Agilent 7890 GC system (Shanghai, China) equipped with a G7000B QQQ triple quadrupole mass detector and an auto sample injector. Both free and esterified (triglycerides, phospholipids, cholesterol esters) FA fractions were measured in total. Samples were analyzed in 76 batches, with cases and matched controls included in the same batch. Pooled human plasma was used for quality control (QC). The experimental details and the coefficients of variation of the measured FAs were published elsewhere [20 (link)].
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