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24 protocols using anti rabbit igg hrp

1

Immunohistochemical Analysis of Cleaved Caspase-3

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Deparaffinized and rehydrated tissue was processed for antigen retrieval using Antigen Unmasking Solution (Vectorlabs, #H3300) at 97 °C for 25 min, left to cool down for 1 h, then permeabilized with 0.2% Triton X-100 in phosphate-buffered saline (PBS) for 45 min, washed with PBS and blocked with 0.2% gelatine and 0.5% bovine serum albumin (BSA) in PBS for 30 min. The tissue was incubated with polyclonal rabbit anti-mouse cleaved caspase-3 primary antibody (1:100 Cell Signalling, #9661) overnight at 4 °C, washed with PBS the next day, blocked with 0.2% gelatin and 0.5% BSA for 10 min and then incubated with HRP-anti-rabbit-IgG (Dako, # P0448) for 1 h at room temperature. Then, the tissue was washed with PBS and the 3,3’-diaminobenzidine tetrahydrochloride (DAB) solution (ThermoFischer Scientific, #34,002) was added for 10 min, following washing with tap water, haematoxylin staining and dehydration. Cleaved caspase-3 positive cells were detected using brightfield settings on a Widefield Nikon Ti2 microscope (magnification 20x) and manually quantified with Fiji by counting the brown-stained nuclei.
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2

Nanobody Binding Assay for VAR2CSA Antigen

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Nanobody recognition of recombinant VAR2CSA protein and domains was measured by ELISA. Recombinant VAR2CSA (50 nM in PBS) was coated on Nunc MaxiSorp® plates overnight at 4°C. Non-specific binding sites were blocked by incubating the plates with 5% skim milk in PBS for one hour at room temperature (RT). After three washes in PBS+0.05% Tween-20, Nbs diluted in 1% skim milk in PBS were added to the wells (50 nM) and incubated for 90 min at RT. The plates were washed three times in PBS+0.05% Tween-20 before polyclonal rabbit anti-camel Ab (kindly provided by B. Stijlemans [36] (link)) was added for 1 h (non-commercial; diluted 1∶2000 in 1% skim milk in PBS.) After three washes in PBS+0.05% Tween-20, horseradish peroxidase-conjugated (HRP) anti-rabbit-IgG (DAKO, P0448) diluted 1∶2000 in 1% skim milk in PBS was added for 1 h. The plates were washed three times in PBS+0.05% Tween-20 and binding of Nb was visualized by adding o-phenylenediamine substrate. After 20 min, the HRP enzymatic reaction was stopped by adding 2.5 M H2SO4 and the optical density at 490 nm measured using an ELISA plate reader (VersaMax Molecular Devices).
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3

Western Blot Analysis of Cell Signaling

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The protein extraction and western blot analysis protocol were described in our previous study [20 (link)]. The primary antibodies detected IGF2BP3 (#07-104) was from Merck Millipore. Other primary antibodies were from Cell Signaling (Danvers, MA) including p21 (#2946), p27 (#2552), p-Rb (Ser807/811) (#9308), cleaved-PARP (Asp214) (#9541), Cyclin D3 (#2936), CDK4 (# 12790), CDK6 (#3136) and GAPDH (#2118). The secondary antibodies were anti-Mouse IgG-HRP (Dako, 00049039, 1:30000) and anti-Rabbit IgG-HRP (Dako, 00028856, 1:10000).
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4

Characterization of RNA Methylation Regulators in Adipogenesis

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3T3-L1 pre-adipocytes were obtained from ATCC (Manassas, VA). The human FTO and mouse RUNX1T1 genes were cloned into pEGFP-C1B56 (link). Human SR plasmids were bought from OriGene Technologies (Rockville, MD). The expression constructs were generated using PCR and subcloned into pCS2+ vectors with an N-terminal FLAG tag57 (link). Polyclonal rabbit anti-FTO antibody was affinity-purified from rabbits immunized with 6×His-tagged full-length human FTO protein as previously reported9 (link). Polyclonal rabbit anti-ALKBH5 antibody was generated against synthesized peptide (RKYQEDSDERSD, 58-70 amino acids of human ALKBH5) by CWBio (Beijing) as previously reported34 (link). The primary antibodies were purchased from commercial sources: rabbit anti-METTL3 (MT-A70; 15073-1-AP, Proteintech Group); rabbit anti-RUNX1T1 (15494-1-AP, Proteintech); mouse anti-β-tubulin (t-5293, Sigma); rabbit anti-m6A (202003; Synaptic Systems); mouse anti-HA (cw0092B, CWbiotech); rabbit anti-Flag (F7425, Sigma); mouse anti-Flag (F1804, Sigma). The secondary antibodies used for immunoblotting and dot-blotting: anti-Rabbit IgG-HRP (p0448, dakocytomation); anti-Mouse IgG-HRP (p0161, dakocytomation).
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5

Antibody Sources for Cell Signaling

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The primary antibodies of TEAD1 (sc-376113), TEAD4 (sc-134071), and CTGF (L-20) (sc-14939) were from Santa Cruz (Dallas, TX, USA). YAP1 (ab52771) antibody and HA tag (ab18181) were achieved from Abcam (Cambridge, MA, USA). AMOTL1 (HPA001196) and Flag-tag (F3165) antibodies were obtained from Sigma-Aldrich (St. Louis, MO, USA). Other primary antibodies were from Cell Signaling (Danvers, MA, USA), including p21 (#2946), p27 (#2552), pRb (Ser807/811) (#9308), Erk (#9102), pErk (#9101), Myc (#2278), cyclin D1 (#2978), c-Myc (#9402), and GAPDH (#2118). Anti-Mouse IgG-HRP (Dako, Glostrup, Denmark, 00049039, 1:30,000) and anti-Rabbit IgG-HRP (Dako, 00028856, 1:10,000) were used for secondary antibodies. The related protocol was suggested before [13 (link)].
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6

Protein Expression Analysis in Gastric Cancer

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Total protein was extracted from gastric cancer cell lines and paired primary tumors and non-tumorous tissues using RIPA lysis buffer with proteinase inhibitor. Protein concentration was measured by the method of Bradford (Bio-Rad, Hercules, CA). Twenty-microgram of protein mixed with 2 × SDS loading buffer were loaded on each lane, separated by 12% SDS-polyacrylamide gel electrophoresis. YY1 protein was then detected using anti-YY1 antibody (1:1000, H-10, sc-7341, Santa Cruz Biotechnology, Dallas, TX). Other antibodies applied included cleaved-PARP (Asp214) (1:1000, #9541, Cell Signaling, Danvers, MA), active-β-catenin (1:1000, #05-665, Millipore, Billerica, MA), β-catenin (1:10000, #610154, BD Transduction Laboratories, San Jose, CA), CCND1 (1:1000, #2926, Cell Signaling, Danvers, MA ), c-Myc (1:1000, #9402, Cell Signaling, Danvers, MA), anti-Mouse IgG-HRP (1:30000, #00049039, Dako, Glostrup, Denmark) and anti-Rabbit IgG-HRP (1:40000, #00028856, Dako, Glostrup, Denmark).
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7

Immunohistochemical Detection of Viral Proteins

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At the relevant time points after inoculation mice were euthanized and lungs were inflated with 10% formalin and embedded in paraffin. Lungs were subsequently sectioned and immunohistochemistry (IHC) NP-staining was performed as described previously [40 (link)]. To detect eGFP in the mice inoculated with HPAI H5N1 reporter virus, a GFP rabbit IgG polyclonal antibody (Life Technologies, Bleiswijk, the Netherlands) was used in a 1/100 dilution. Normal rabbit IgG (R&D systems, Abingdon, UK) was used in a 1/100 dilution as a control. Anti-Rabbit IgG HRP (Dako) was used in a 1/200 dilution as a secondary antibody.
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8

Western Blot Analysis of RASAL2 and YAP1

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Protein was extracted in ice-cold RIPA lysis buffer containing complete protease inhibitor cocktail tablets (Roche, Rotkreuz, Switzerland). RASAL2 was detected with a polyclonal anti- RASAL2 antibody (1:250, ab121578, Abcam). Anti-YAP1 antibody (1:20000, ab52771) was provided by Abcam. Other primary antibodies were from Cell Signaling (Danvers, MA, USA), including antibodies to LATS2 (1:1000, #5888S), phospho-YAP1 (S127) (1:1000, #4911) and Cyclin D1 (1:1000, #2926). β-actin (1:100000, A5441, Sigma-Aldrich, St. Louis, MO, USA) expression was used as an equal loading control. The secondary antibodies were anti-Mouse IgG-HRP (1:15000, 00049039, Dako, Agilent Technologies, Santa Clara, CA, USA) and anti-Rabbit IgG-HRP (1:5000, 00028856, Dako).
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9

AKT2 and pAKT Protein Expression

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Protein was extracted from gastric cancer cell lines and paired primary tissues using RIPA lysis buffer with proteinase inhibitor. Protein concentration was measured by the method of Bradford (Bio-Rad, Hercules, CA) and 20 μg of protein mixed with 2 × SDS loading buffer was loaded per lane, separated by 12% SDS-polyacrylamide gel electrophoresis. Protein expression was detected using primary monoclonal anti-AKT2 antibody (1:1000 dilution, #3063, Cell Signaling, Danvers, MA), anti-phospho-AKT (S473) (1:1000 dilution, #9271, Cell Signaling) and anti-pS6 antibody (1:1000, #4858, Cell Signaling). The secondary antibodies were anti-Mouse IgG-HRP (1:30000, 00049039, Dako, Glostrup, Denmark) and anti-Rabbit IgG-HRP (1:10000, 00028856, Dako). The Western blot bands were quantified by ImageJ.
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10

Comprehensive Western Blot Analysis

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Western blot was performed with whole-cell protein lysates in RIPA lysis buffer. Equal amounts of 10 µg proteins were used for western blot analyses. PHLDB2 primary antibody was from Abcam (1:1000, ab202350, Cambridge, UK). Other primary antibodies were from Cell Signaling (Danvers, MA, US), including NOTCH3 (D11B8) (1:1000, #5276), p21 (1:1000, #2946), p27 (1:1000, #2552), Phospho-Rb (Ser807/811) (1:1000, #9308), cleaved caspase-3 (Asp175) (1:1000, #9661), cleaved-PARP (Asp214) (1:1000, #9541), Phospho-Akt (Ser473) (1:1000, #4060), Phospho-mTOR (Ser2448) (1:1000, #5536), CCND1 (1:1000, #2978), CDK4 (1:1000, #12790), CDK6 (1:1000, #3136), and GAPDH (1:2000, #2118). Secondary antibodies anti-Mouse IgG-HRP (1:30000, 00049039) and anti-Rabbit IgG-HRP (1:10000, 00028856) were from Dako (Glostrup, Denmark).
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