The largest database of trusted experimental protocols

8 protocols using ab28172

1

Mitochondrial Protein Analysis by SDS-PAGE and BN-PAGE

Check if the same lab product or an alternative is used in the 5 most similar protocols
For SDS PAGE experiments, 20μg of mitochondrial proteins or 15μg of whole cell extracts were loaded in 15% SDS gels. Membranes were probed with the following antibodies: NDUFA9 (1:1000, abcam, ab14713), NDUFAF1 (1:10000, abcam, ab79826), NDUFS3 (1:1000, abcam, ab110246), NDUFB9 (1:1000, abcam, ab106699), NDUFV2 (1:1000, proteintech, 15301-1-AP), Prohibitin (1:1000, abcam, ab28172), SDHA (1:1000, abcam, ab14715), UQCRC2 (1:1000, abcam, ab14745), Tubulin (1:1000, Cell Signaling, #21485). Proteins separated by BN PAGE were transferred to PVDF membranes and western blotting was performed as above. Alternatively, the BN gels were used for in-gel activity assays for complex I by incubating the gel in the assay buffer consisting of 5mM Tris/HCl with 2.5mg/ml nitrotetrazolium blue and 0.1mg/ml NADH (pH 7.4).
+ Open protocol
+ Expand
2

Immunohistochemical Analysis of Adipose Tissue

Check if the same lab product or an alternative is used in the 5 most similar protocols
Antibodies included rabbit anti-UCP1 (ab10983, Abcam), rabbit anti-prohibitin (ab28172, Abcam), rabbit anti–perilipin A (ab3526, Abcam), rat anti–mouse endomucin (14-5851, eBioscience) and mouse anti–β-actin (TA346894, ZSGB-Bio). The HRP DAB detection system for rabbit or rat antibodies (ZLI-9018, ZSGB-Bio) was used for immunohistochemical staining. Rodent HFD with 60% kcal% fat was from Research Diets.
+ Open protocol
+ Expand
3

PM Isolation and Characterization in SK-BR-3 Cells

Check if the same lab product or an alternative is used in the 5 most similar protocols
For initial PM isolation using SK-BR-3 cells, samples of input, crude nuclear pellet, cytosol, total membranes, and PMs were taken for downstream analysis, using RIPA buffer (89901, Thermo Scientific) to extract proteins. All purified PM samples used in later analyses were solubilized in 0.5% CHAPS in PBS. The protein concentration of each sample was determined using the bicinchoninic acid (BCA) assay (Thermo Scientific) with bovine serum albumin (BSA) as a standard. 5 µg protein was loaded onto each lane of a denaturing 4–12% gradient gel and fractionated. Proteins were transferred to a nitrocellulose membrane and the blot was probed with an ErbB2- (ab2428, Abcam), prohibitin- (ab28172, Abcam), lamin A/C- (sc20681, Santa Cruz Biotechnologies), calnexin- (sc-11397, Santa Cruz Biotechnologies) or KRT17- (ab51056, Abcam) specific antibody. Western blots were imaged and quantitated with a Licor Odyssey Infrared Imaging System.
+ Open protocol
+ Expand
4

Immunohistochemical Analysis of Mitochondrial Proteins

Check if the same lab product or an alternative is used in the 5 most similar protocols
Fixed tissues were dehydrated using a full-automatic dehydrator, paraffin embedded and then sectioned into 5-mm thick samples. First, the dewaxed sections were placed into the dyeing tank with 3% methanol hydrogen peroxide at room temperature for 10 min. The samples were rinsed with PBS three times for 5 min each. The slices were dipped into 0.01 M citrate buffer (pH 6.0) and then heated in the microwave until boiling for 5 min interval; the heating was repeated once more. After cooling, the slice was washed with PBS two times for 5 min each. The sections were then blocked with a blocking serum (ZLI-9021, ZSGB-BIO) at room temperature for 20 min. The sections were incubated with the AR (C-19) antibody (1:100; sc-815, Santa Cruz) at 4°C overnight and then with a secondary antibody (1:250; sp-9001, ZSGB-BIO) for 30 min at 37°C. Samples were rinsed with PBS three times for 5 min each and then processed with the Concentrated DAB kit (K135925C, ZSGB-BIO). Sections were then dehydrated in alcohol, cleared in xylene and mounted in synthetic resin. Mitochondria staining of paraffin tissue sections was carried out using the anti-prohibitin antibody mitochondrial marker (1:100; ab28172, Abcam). The mean density of immunohistochemical staining was measured using Image-Pro Plus (IPP). n = 4 per group; five technical replicates.
+ Open protocol
+ Expand
5

Mitochondrial Protein Analysis by SDS-PAGE and BN-PAGE

Check if the same lab product or an alternative is used in the 5 most similar protocols
For SDS–PAGE experiments, 20 μg of mitochondrial
proteins or 15 μg of whole-cell extracts were loaded in 15%
SDS gels. Membranes were probed with the following antibodies: NDUFA9 (1:1,000, Abcam, ab14713),
NDUFAF1 (1:10,000, Abcam,
ab79826), NDUFS3 (1:1,000,
Abcam, ab110246), NDUFB9
(1:1,000, Abcam, ab106699), NDUFV2 (1:1,000, Proteintech, 15301-1-AP), PhB (1:1,000, Abcam, ab28172),
SDHA (1:1,000, Abcam,
ab14715), UQCRC2 (1:1,000,
Abcam, ab14745) and tubulin (1:1,000, Cell Signaling, no. 21485). Proteins
separated by BN PAGE were transferred to Polyvinylidene fluoride (PVDF)
membranes and western blotting was performed as above. Alternatively, the BN
gels were used for in-gel activity assays for complex I by incubating the gel in
the assay buffer consisting of 5 mM Tris/HCl with
2.5 mg ml−1nitrotetrazolium blue and
0.1 mg ml−1NADH (pH 7.4).
+ Open protocol
+ Expand
6

Mitochondrial Protein Profiling by Western Blot

Check if the same lab product or an alternative is used in the 5 most similar protocols
The mitochondrial fractions were treated with a sample buffer (50 mM Tris, pH 6.8, 10% glycerol, 1.3% SDS, and 100 µM DTT) and heated at 90 °C for 5 min. The samples were loaded in a 12% SDS-polyacrylamide gel, separated by electrophoresis, and then transferred to a PVDF membrane. After 1 h of incubation with a blocking buffer (PBS, 3% Tween, and 3% albumin), the membrane was washed and incubated overnight with the primary antibodies at 4 °C. The primary antibodies used were rabbit monoclonal anti-AQP8 antibody [EPR8397] (ab133667) (Abcam, Cambridge, UK) (1 μg/mL), ornithine transcarbamylase (AV41766) (OTC) (1 μg/mL), and carbamoyl phosphate synthetase 1 (AV45689) (CPS1) (0.5 μg/mL) (Sigma-Aldrich). Rabbit antibody (ab28172) (Abcam) against prohibitin (0.5 μg/mL), an inner mitochondrial membrane protein, was also used. After that, the blots were repeatedly washed and incubated with a secondary antibody against rabbit IgG conjugated to horseradish peroxidase for 1 h. Finally, proteins were detected using a chemiluminescent kit (ECL Pierce, Thermo Fisher Scientific) and via the exposure of autoradiographic films (Cytiva), and the protein bands were analyzed based on densitometry in Fiji (ImageJ) v. 2.9.0/1.53t.
+ Open protocol
+ Expand
7

Testis Tissue Protein Analysis

Check if the same lab product or an alternative is used in the 5 most similar protocols
The total proteins in the testis tissues were separated using a Total Protein Extraction Kit (BC3711, Solarbio). The protein concentration was measured using a Protein Assay kit (Beyotime). Next, the protein samples were separated by 10% SDS-PAGE and electrically transferred to PVDF membranes (Millipore, MA, USA). After sealing with 3% bovine serum albumin at room temperature for 1 h, the membranes were hatched with the primary antibodies (rabbit anti-prohibitin (PHB), ab28172, 1:1000; rabbit anti-Beclin-1, ab62557, 1:2000; rabbit anti-LC3II/I, ab128025, 1:1,000; rabbit anti-p62, ab56416, 1:1,000; rabbit anti-SCF, ab64677, 1:1000; rabbit anti-Parkin, ab15494, 1:1,000; rabbit anti-LKB1, ab199970, 1:1,000; rabbit anti-AMPKα, ab131512, 1:500; rabbit anti-phosphorylated AMPKα (p-AMPKα), ab133448, 1:10000; rabbit anti-ULK1, ab167139, 1:1000; rabbit anti-p-ULK1, ab203207, 1:1000; rabbit anti-β-actin, ab8227, 1:5000; Abcam, Cambridge, UK) overnight at 4 °C. The membranes were incubated with goat-anti-rabbit IgG (H + L)-HRP (1:10000, ab6721, Abcam) for 1 h at room temperature and then rinsed thrice with TBST thrice. Protein bands were visualized using an Electrochemilluminescence (ECL) chemiluminescence kit (WBULS0500; EMD Millipore), and band intensity was analyzed with Image-Pro Plus 6.0.
+ Open protocol
+ Expand
8

Comprehensive Protein Profiling of Extracellular Vesicles

Check if the same lab product or an alternative is used in the 5 most similar protocols
Western blot was performed using antibodies against human hnRNPA2B1 (Sigma-Aldrich; SAB1403931, 1:500), mouse hnRNPA2B1 (Sigma-Aldrich; HPA001666, 1:200), TSG101 (Abcam; ab125011, 1:1000), Alix (Novus Biologicals; JM 85–31, 1:1000), HSP90 (Abcam; ab59459, 1:1000), Flotillin 1 (Abcam; ab133497, 1:200), GM130 (Abcam; ab52649, 1:1000), Prohibitin (Abcam; ab28172, 1:200). Signal was visualized using corresponding HRP-conjugated secondary antibody (Amersham, 1:3,000) and ECL Plus™ Western Blotting Detection Reagents (Amersham). β-actin (Sigma-Aldrich; A5441, 1: 2000) served as loading control.21 (link), 22 (link)
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!