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4 protocols using axioimager 2i fluorescence microscope

1

Quantifying Radiation-Induced DNA Damage

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The ethanol-fixed cells were subjected to cyto-centrifugation followed by immunofluorescent staining to detect DNA damage-associated protein accumulation as microscopic foci at DNA double-strand break sites as described by Ahmed et al. [29 (link)]. Primary antibodies against γ-H2AX (Mouse anti-γ-H2AX; Merck) and 53BP1 (Rabbit anti-53BP1; Novus) were applied and detected with secondary goat anti-mouse Alexa-488 (Mobitec) and donkey anti-rabbit Cy3-labeled antibodies (Dianova). The number of radiation-induced DNA damage and repair protein foci was analysed by the same experienced investigator (HS) in 100 PBMC nuclei per sample by manual counting directly in a Zeiss Axioimager 2i fluorescence microscope of the ISIS fluorescence imaging system (MetaSystems) equipped with green and red double band pass filters (AHF Analysentechnik). Images were recorded at 630 × magnification with a Plan-Apochromat 63 × /1.40 oil lens.
To determine the number of radiation-induced foci per cell (RIF), the baseline focus values of each sample and time point (0-d, 0-4 h, 0-24 h) was determined. RIF are, for this study, defined as the difference between the number of foci per cell of the irradiated sample at the three time points 0 h, 4 h and 24 h (50 mGy-d, 50 mGy-4 h, 50 mGy-24 h) and the respective baseline value of the identical non-irradiated sample at the same time point.
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2

Immunocytochemistry Protocol for Visualizing HO-1 Expression

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We applied immunocytochemistry as described previously (Liebau et al., 2011 (link)). Rabbit monoclonal anti-HO-1 (dilution 1:1,000, Cell Signaling, Danvers, United States) served as primary antibody before fluorescence-labeling using Alexa Fluor® 488-conjugate goat polyclonal anti-rabbit (dilution 1:500, Life Technologies, Waltham, United States). Cytoskeleton was stained using TexasRed-conjugated Phalloidin (dilution 1:40, Invitrogen, Mannheim, Germany) and nuclei were counter stained using Fluoroshield Mounting Medium (Abcam, Cambridge, United Kingdom) containing 4,6-diamidino-2-phenylindole (DAPI).
For image acquisition we used a Zeiss Axioimager 2i fluorescence microscope in combination with the ISIS fluorescence imaging system (MetaSystems, Altlussheim, Germany).
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3

Immunofluorescence Staining of hnRNP K and p53

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The IF staining was performed as previously described (13 (link)) using a rabbit monoclonal antibody targeting hnRNP K (1:250, Biozol; cat. no. LS-C30312-50)/mouse monoclonal antibody targeting Ser15-phospho-p53 (1:250, Cell Signaling Technology, Inc.; cat. no. 9286). Fluorescence-labeled secondary antibody (Alexa Fluor® 488-conjugate; donkey polyclonal anti-rabbit, 1:500; Thermo Fisher Scientific, Inc.; cat. no. A-21206) and Texas-Red-X-conjugate (goat polyclonal anti-mouse, 1:500; Thermo Fisher Scientific, Inc.; cat. no. T-6390). Primary and secondary antibodies were incubated for 1 h at room temperature in the dark. For image acquisition, a Zeiss Axioimager 2i fluorescence microscope and the ISIS fluorescence imaging system (MetaSystems, Altlussheim, Germany) were used.
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4

Quantification of DNA Double-Strand Break Foci

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The separation and fixation of the white blood cells and the counting of the identified DSB foci followed the protocol described in detail in Eberlein et al. (16) , and the DSB foci staining was performed according to Lassmann et al. (18) and Lamkowski et al. (14) . Briefly, white blood cells were obtained by density centrifugation (CPT Vacutainer tube; BD) and fixed in ice-cold 70% ethanol. Samples were kept at 220°C until immunostaining for g-H2AX and 53BP1 using primary antibodies against g-H2AX (Millipore) and 53BP1 (Acris Antibodies) that were detected with secondary goat antimouse Alexa-488 and donkey antirabbit Cy3-labeled antibodies (both Dianova), respectively. The number of DSB repair protein foci was analyzed by an experienced investigator (HS) in lymphocyte nuclei (n 5 100 peripheral blood lymphocytes/sample) by manual focus counting using a red/green double-band pass filter (AHF) and 63• lens of a Zeiss Axioimager 2i fluorescence microscope equipped with the ISIS fluorescence imaging system (MetaSystems).
Counting the blood sample before therapy gave us the baseline background foci rate. This rate was subtracted from the DNA foci counts obtained after irradiation, which resulted in the average number of RIF/cell.
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