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24 protocols using anti β tubulin antibody

1

Epigenetic Regulation in EMT Signaling

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PVDF membrane was obtained from Millipore (Bedford, MA, USA); anti-E-cadherin, anti-N-cadherin, anti-SET7/9, anti-OGG1/2, anti-HDAC3, LSD1 shRNA plasmid and JMJD2a shRNA plasmid were obtained from Santa Cruz Biotechnology (Santa Cruz, CA, USA); anti-FLAG and anti-smooth muscle actin antibody and Phalloidin-TRITC were obtained from Sigma-Aldrich (St Louis, MO, USA); DCFDA and Alexa 488 secondary antibody were obtained from Molecular Probes; anti-H3K4me2, anti-H3K4me3, anti-H3K9me2, anti-H3K9me3, anti-H3, anti-LSD1, anti-JMJD2A, anti-SUV39H1, anti-NCoR1, anti-APE1, anti-β-actin, anti-β-tubulin antibodies, anti-IgG mouse and anti-IgG rabbit were obtained from Abcam (Cambridge, UK); anti-pSMAD2/3 (Ser 423/425) and anti-SMAD2/3 antibodies were obtained from Cell Signaling Technology (Danvers, MA, USA); anti-8-oxo-dG antibodies were obtained from Trevigen Inc. (Gaithersburg, MD, USA); and the OxyDNA assay was obtained from Calbiochem (San Diego, CA, USA).
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2

Culturing and Characterizing Neural Cells

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Dulbecco’s modified Eagle’s medium (DMEM), penicillin, streptomycin l-glutamine, trypsin-ethylenediaminetetraacetic acid disodium and tetra-sodium salt (EDTA) solution, fetal bovine serum (FBS) were from Microgem srl (Pozzuoli, NA, Italy); bovine serum albumin was from Thermo Fisher Scientific (Waltham, MA, USA); C6-Cer was obtained by Avanti Polar (Alabaster, AL, USA); anti-glial fibrillary acid protein (GFAP) and anti-βIII-tubulin antibodies were obtained from Dako, Agilent (Santa Clara, CA, USA); anti-SMase, anti-nCerase and anti βtubulin antibodies were from Abcam (Cambridge, UK); goat anti-rabbit secondary antibodies were from Sigma-Aldrich (St. Louis, MO, USA); anti-CD9 and anti-CD63 from Biorbyt (Cambridge, UK); anti-neurofilament protein (NF200) antibody and bond polymer refine detection were from NOVOCASTRA Laboratories, Ltd. (Newcastle, United Kingdom). For research involving biohazards, biological select agents and reagents, standard biosecurity safety procedures were carried out.
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3

Western Blot Analysis of SOX30 Protein

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BC cells and BC tissue samples were rinsed with phosphate-buffered saline (PBS) on ice. An appropriate amount of radioimmunoprecipitation assay (RIPA) buffer (Pierce) mixed with protease inhibitor (1:100 dilution, Thermo scientific, USA) was added. A bicinchoninic acid (BCA) protein assay kit (Pierce) was then used to detect total protein concentrations. Samples were electrophoretically run on a 12% polyacrylamide gel, and then proteins (20 μg per sample) were applied onto a polyvinylidene difluoride (PVDF) membrane (Millipore, Germany). Protein samples on the membranes were incubated with anti-SOX30 antibodies (1:1500, Santa Cruz Biotechnology, USA) for 60 min and anti-β-tubulin antibodies (1:8000, Abcam, UK-E) overnight at 4 °C along with a small vibration. The following morning, membranes were TBST-rinsed and left for a final incubation with goat anti-rabbit secondary antibodies (1:8000, Abcam, UK-E) for 1 h on the basis of the internal control. Chemiluminescence imaging instruments were provided by Gene Company Limited.
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4

Investigating 37LRP Inhibitor NSC48478

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Cell culture reagents were purchased from Gibco Laboratories (Grand Island, NY, USA). The SAF32 anti-PrP antibody was from Cayman Chemical (Ann Arbor, MI, USA). The recombinant His-tagged 37LRP polypeptide (r37LRP) was made in bacteria and Nickel affinity purified, as previously described [27 (link)]. The polyclonal 4290 Ab was made against a C-terminal peptide derived from LR and was a kind gift from Dr. Mark E. Sobel (Bethesda, MD, USA); NSC48478 inhibitor has been already described [27 (link)]. Protein-A-Sepharose was from Pharmacia Diagnostics AB (Uppsala, Sweden). Transferrin Alexa-594- conjugated (Tfr), Alexa-488-, Alexa-546-conjugated secondary Abs and LysoTracker Red DND-99 were from Invitrogen (Molecular Probes). The anti- KDEL, anti-Giantin, antibodies were from StressGen Biotechnologies Corp (Victoria, BC, Canada). Anti-β-tubulin antibody was from Abcam. Anti-phospho RPS6 antibody (Ser240/244), anti-GSK and anti-pGSK3β Ser9 were from Cell Signalling Technology. DAPI was purchased from Cell Signal Technology. Biotin-LC was from Pierce and all other reagents were from Sigma Chemical Co. (St Louis, MO, USA). NSC48478 [1-((4-chloroanilino)methyl)-2-naphtol] was obtained from the NCI/DTP Open Chemical repository (http://dtp.cancer.gov), dissolved in DMSO and stored at −20 °C.
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5

Western Blot Protein Detection Protocol

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Cells were lysed in ice-cold lysis buffer (50 mM Tris-HCl, pH 7.4, containing 150 mM NaCl, 1% Triton X-100, and protease inhibitor cocktail) for 30 min on ice. Lysates were centrifuged at 2,0000 g for 30 min at 4 °C. The supernatant was mixed with SDS loading buffer (100 mM Tris-HCl, pH 6.8, 4% SDS, and 20% glycerol with bromophenol blue) and heated for 5 min. Proteins were separated by 12% SDS-PAGE gel and transferred to PVDF membranes. The membrane was blocked in 5% non-fat milk, and incubated with the intended primary antibody in TBS containing 0.1% Tween 20 (TBS-T) for 3 h. After washing with TBST-T, the membrane was incubated with HRP-conjugated secondary antibody for 1 h. After three washes with TBST-T, bands were visualized by chemiluminescence. The primary antibodies used in this study were: as follow anti-transgelin-2 (Novus Biologicals, CO, USA), anti-β-actin (Cell Signaling Technology, MA, USA), anti-Flag (Sigma-Aldrich, MO, USA), anti-GFP (Abcam, MA, USA), anti-ERK1/2 (Cell Signaling Technology, MA, USA), anti-phospho-ERK1/2-T202/y204 antibody(Cell Signaling Technology, MA, USA), anti-β-tubulin antibody (Abcam, MA, USA), anti-GST antibody (Abcam, MA, USA).
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6

Protein Expression Analysis by Western Blot

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The quantitated cell lysates were separated on 8%–12% SDS polyacrylamide gels and transferred onto PVDF membranes. After blocking for 1 h, the membranes were incubated sequentially with anti-V5 antibody (Life technologies, Carlsbad, CA), anti-β-actin antibody (Abcam, Cambridge, MA), anti-CDH1 antibody (BD Biosciences, San Diego, CA), anti-VIM antibody, anti-β-catenin ( Millipore, Temecula, CA), anti-CDH2 antibody (BD Bioscience, San Diego, CA), anti-SNAI2 antibody, anti-c-JUN antibody (Santa Cruz Biotechnology, Dallas, TX), and anti-β-tubulin antibody (Abcam, Cambridge, MA) in PBST. After washing for 3 times, the bound antibody was detected using the Enhanced Chemiluminescence System.
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7

Studying Multiple Myeloma via Cell Lines

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Human multiple myeloma cell lines (RPMI8226, U266) were obtained from Dr. Slavica Vuckovic (QIMR Berghofer Medical Research Institute). Human peripheral blood mononuclear cells (PBMCs) were isolated from the whole blood of healthy volunteers and were collected under the ethical approval BPS/08/14/HREC. The cells were cultured in RPMI-1640 medium (Gibco, VIC, Australia) containing 10% (V/V) fetal bovine serum (FBS) (Gibco), 200 mM L-glutamine (Invitrogen, VIC, Australia), and 100 U/ml penicillin and 100 μg/ml streptomycin (Invitrogen). The Trx1 antibody (5G8) is a mouse monoclonal antibody generated against recombinant human thioredoxin [62 (link)]. The monoclonal anti-TrxR1 antibody was purchased from R&D systems (MN, USA). The polyclonal anti-NF-кβ p65 antibody was purchased from GeneTex (CA, USA) and anti-β-tubulin antibody was purchased from Abcam. The Trx1 inhibitor PX-12 (1-methylpropyl 2-imidazolyl disulfide) was purchased from Cayman Chemicals (MI, USA). The NF-κβ inhibitors BAY 11-7082 and curcumin were purchased from Cayman Chemicals and Sigma. The TrxR1 validated small interfering RNA (siRNA) and control siRNA were purchased from Santa Cruz Biotechnology (TX, USA). The Trx1-anti sense plasmid was made by reversing the orientation of the Trx insert in pcDNA3.1 (Invitrogen) of a pTrx-WT plasmid previously described [63 (link)].
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8

Histological Analysis of Rat Knee Joint

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The rat knee joint samples were decalcified in 10% EDTA (pH 7.5). The decalcified specimens were trimmed, dehydrated and embedded in paraffin. Sections (6 µm) were cut in the sagittal plane, and were then deparaffinized with xylene and dehydrated with ethanol. Heat-induced antigen retrieval was performed with sodium citrate at 95°C for 30 min. Endogenous peroxidase activity was blocked with 3% H2O2 for 20 min at room temperature and the treated sections were blocked for 1 h at room temperature with 10% goat serum (Beijing Solarbio Science & Technology Co., Ltd.). Subsequently, the sections were incubated with rabbit anti-F-actin antibody (1:200; cat. no. bs-1571R; Biosharp Life Sciences), anti-vimentin antibody (1:130; cat. no. ab92547; Abcam) or anti-β tubulin antibody (1:400; cat. no. ab179513; Abcam) overnight at 4°C. HRP-conjugated goat anti-rabbit secondary antibody (1:1,000; cat. no. ab6721; Abcam) was then added and incubated at 37°C for 30 min. Antigens were detected using the DAB kit (Beyotime Institute of Biotechnology) after 20 min of incubation at room temperature. Photomicrographs were captured under a light microscope (BX53; Olympus Corporation).
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9

Molecular Mechanisms of Alzheimer's Disease

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Cell culture reagents were purchased from Gibco Laboratories (Grand Island, NY, USA). Transferrin Alexa-594- conjugated (Tfr), cy2-, cy5-conjugated secondary Abs and Mitotracker Red CMXRos were from Invitrogen (Molecular Probes, Eugene, OR, USA). The anti-Giantin antibody was from StressGen Biotechnologies Corp (Victoria, BC, Canada). Anti-β-tubulin antibody was from Abcam. Anti-GSK, anti-pGSK3β Ser9 and DAPI were from Cell Signalling Technology. Anti-APP rabbit polyclonal antibody A8717 was from Sigma-Aldrich (St. Louis, MO, USA). Anti-Aβ antibody 6E10 (previously Covance, SIG-39320) and 4G8 were from Biolegend. All other reagents were from Sigma Chemical Co. (St. Louis, MO, USA). NSC47924 [1-((4-methoxyanilino)methyl)-2-naphtol] was obtained from the NCI/DTP Open Chemical repository (http://dtp.cancer.gov), dissolved in DMSO and stored at −20 °C.
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10

Prion Protein Analysis Protocol

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Proteinase K (PK), 1-hydroxybenzotriazole, N, N′-diisopropylcarbodiimide, trifluoroacetic acid, triisobutylsilane, piperidine, and dichloromethane were obtained from Sigma Chemical Co. (St. Louis, MO). Peptide N-glycosidase F (PNGase F) and protease inhibitor cocktail were obtained from New England Biolabs (Beverly, MA). Fmoc-amino acids and amino-PEG cellulose membranes were obtained from Intavis (San Marcos, CA). N-α-Fmoc-O-benzyl-L-phosphothreonine and N-α-Fmoc-O-benzyl-L-phosphoserine were purchased from AnaSpec (San Jose, CA). ECL Plus for enhanced chemiluminescence was purchased from Amersham Pharmacia Biotech, Inc. (Piscataway, NJ). The following anti-PrP antibodies were used: 3F4 directed against human PrP residues 106–110 [16 (link)], 1E4 against human PrP97–105 [17 (link), 18 (link)] (Cell Sciences, Inc., Canton, MA), and anti-C against PrP220–231 [17 (link), 18 (link)]. Anti β-tubulin antibody was purchased from Abcam (Cambridge, MA).
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