The largest database of trusted experimental protocols

3 protocols using benzamidin

1

Subcellular Fractionation and Co-Immunoprecipitation

Check if the same lab product or an alternative is used in the 5 most similar protocols
For subcellular fractionation, cells were washed twice with cold DPBS and re-suspended in lysis buffer (12.5 mL 1 M HEPES, ph 7.5, 7.5 mL 5 M NaCl, 1.25 mL 200 mM EGTA, 25 mL 100% Gycerin, 2.5 mL Triton X-100, 1.05 g NaF, 1.11 g Na4P2O7 × 10 H2O) containing the protease inhibitors Orthovandat (Sigma aldrich), Leupeptin (Sigma aldrich), Benzamidin (Sigma aldrich), PMSF (Sigma aldrich), Aprotinin (Sigma aldrich). After sonification, cells were centrifuged at 13.000 rpm for 5 min, and supernatants were transferred to new cups and incubated on ice.
For co-immunoprecipitation, 500 μg of the lysates was immunoprecipitated with 4 µL of the indicated antibodies and protein G or A agarose (Roche Diagnostics). The immunoprecipitates were subjected to immunoblotting.
For Western blotting, protein extracts were analyzed by SDS–PAGE and blotted onto nitrocellulose. Upon protein extraction and gel transfer, membranes were washed in TBS washing buffer and incubated with peroxidase-conjugated secondary antibodies. Immunoreactive proteins were visualized by means of an enhanced chemiluminescence detection system (Western blotting detection reagent, GE healthcare). Membranes were probed with anti-NFATc2 (Santa Cruz), anti-Sp1 (Santa cruz) and anti-MEF 2A (Upstate cell signaling solutions). Anti-Lamin B (Santa cruz) and anti-ß-actin (Sigma-Aldrich) antibodies were used as loading control.
+ Open protocol
+ Expand
2

Protein Extraction and Western Blot Analysis

Check if the same lab product or an alternative is used in the 5 most similar protocols
Proteins were extracted after tissue lysis with NP- 40 buffer (20 mM Tris HCl pH 8.0, 135 mM NaCl, 1% NP-40 and 10% glycerol) containing protease and phosphatase inhibitors (1 mM PMSF, 0.45 mg/ml benzamidin, 1 mM leupeptin, 1 mM aprotinin and 5 mM sodium orthovanadate) (Sigma Aldrich, St. Louis, MO, USA). Concentration was determined64 (link) for each animal, and thirty µg of proteins were separated into 12% SDS-PAGE, transferred onto nitrocellulose membranes (GE Healthcare, Wauwatosa, Wisconsin, USA), and blocked. The following antibodies (Santa Cruz Biotechnology, Santa Cruz, CA, USA) were used: rabbit anti- GR (5 µg/ml) (M20); goat anti- pepsinogen C (0.1 µg/ml) (I-19), monoclonal anti- Mist1 (5 μg/ml) (6E8), monoclonal anti- Moesin (5 μg/ml) (38/87) overnight at 4 °C. Monoclonal anti- β-actin (1 µg/ml) (Sigma Aldrich) was used as internal loading control. Reactions were developed with ECL Kit (GE Healthcare) and detected in X-ray films (Kodak, MXG-Plus, Rochester, NY, USA) (Supplementary Fig. 1). Densitometry was performed with ImageJ (1.37 v Software, NIH Public Domain) and bands were cropped to represent control and NMS groups. Gels were run in replicates to confirm results.
+ Open protocol
+ Expand
3

Western Blot Analysis of Cellular and Viral Proteins

Check if the same lab product or an alternative is used in the 5 most similar protocols
Cellular and viral proteins were analyzed by Western blot. After a wash step with PBS, cells were lysed in RIPA (radioimmunoprecipitation) buffer (137 mM NaCl (Roth), 25 mM Tris–HCl (pH 8) (Roth), 2 mM EDTA (pH 8) (Roth), 10% (v/v) glycerol (Roth), 1% (v/v) NP-40 (Sigma-Aldrich), 0.5% (w/v) sodium deoxycholate (Serva), 0.1% (w/v) SDS (Roth)) supplemented with protease inhibitors (1:1000 Pefablock (200 mM) (Roth), 1:1000 Leupeptin (5 mg/ml) (Serva), 1:1000 Aprotinin (5 mg/ml) (Roth), 1:100 Na3VO4 (100 mM) (Sigma), and 1:200 Benzamidin (1 M) (Sigma)) centrifuged at 4 °C and 20,000 rpm for 10 min. Cleared lysates were mixed with 5 × Laemmli buffer and headed for 2 min at 95 °C. Protein separation was performed by SDS-PAGE and protein transfer onto nitrocellulose membranes by Western blotting, followed by blocking in TBS-T buffer (150 mM NaCl, 50 mM Tris–HCl (pH 7.5), 0.2% Triton X-100 (Roth), 1% Tween-20 (Roth)) containing 3% BSA (w/v) (Roth) for 1 h. Membranes were incubated for 1 h or overnight with primary antibodies (Table S1) diluted in blocking buffer. A 45 min incubation with 1:3000 secondary antibody (Table S1) dilutions in TBS-T was performed to detect the primary antibodies using chemiluminescence and the Li-CorOdissey® Fc Imaging System. Signals were analyzed by the Image Studio™ (LiCor) software.
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!