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5 protocols using cell separation columns

1

Establishing and Characterizing Leukemic Lymphocyte Cultures

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MEC1 cells were obtained from Deutsche Sammlung von Mikroorganismen und Zellkulturen (DMSZ, Germany) and cultured in RPMI 1640 medium (Lonza) supplemented with 10% fetal bovine serum, 2 mM glutamine and 15 μg/ml gentamicin (Sigma Aldrich). MEC1 cells stably expressing green fluorescent protein were generated as described previously [23 (link)] and cultured in supplemented RPMI 1640 medium, as above, containing 5 μg/ml blasticidin (Life Technologies). Human umbilical vein endothelial cells (HUVECs; Lonza, Switzerland; passage 5 to 8) were cultured in EGM™-2 BulletKit™ (EBM-2 basal culture medium with 2% FBS plus SingleQuots™ of growth supplements (Lonza)).
Human leukemic lymphocytes were isolated from the peripheral blood of CLL patients, using the human B-cell enrichment cocktail (RosetteSep, StemCell Technologies) or cell separation columns (Miltenyi Biotec). CD19 and CD5 co-expression on cell surface was checked by flow cytometry (FC500, Beckman Coulter) and the purity was always >97%.
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2

Adult Lung Single Cell Isolation

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We prepared adult lung single cell suspensions by enzymatic digestion and in some experiments depleted CD45+ cells by Cell Separation Columns (MACS) using for positive selection (LS) columns (Miltenyi Biotec) in MACS buffer (0.5% bovine serum albumin (BSA), 2 mM EDTA in sterile 1× PBS, filtered and degassed) according to the protocol provided by the vendor. CD45+ cells were depleted by treating cells by binding with anti‐CD45 magnetic beads (Miltenyi Biotec). Depleted cell populations were analyzed by FACS, plated on growth factor–reduced (GFR) Matrigel (BD) for colony‐forming assay as indicated in “Results” section.
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3

Proliferation analysis of T cells under various stimuli

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Lymphoid cells were obtained from peripheral lymph nodes (see above) and were labeled with 2 µM Oregon Green 488 dye (Invitrogen) for 15 min at room temperature and then cultured in 96 well plates (1.5×105 cells/well) and stimulated for 72 h with 7.5×104 anti-CD3/anti-CD28 mAb-coated T cell expander beads (Invitrogen) or restimulated with MOG35–55 (25 µg/ml). Cells were labeled with anti-CD4-PE mAb (eBioscience) and proliferation analyzed by two color flow cytometry on a FACSCaliber flow cytometer with BD CellQuest software (BD Biosciences). Additional experiments were carried out by combining T cells with B20-4.1.1 (100 µg/ml), K(1-3) (5 µg/ml) or IgG control (100 µg/ml). In these experiments, the lymphoid cells were further purified into CD3+ T cells by passage through cell separation columns (Miltenyi Biotec). Cells were either naive T cells from wild type mice, or T cells taken from mice with untreated EAE and restimulated by culture with BMDCs (3.2×103/well) and MOG35–55 (25 µg/ml). T cells were labeled with Oregon Green to assess proliferation. Labeling with Oregon Green was carried out prior to combining the T cells with BMDCs in order to exclude BMDCs from the analysis based on their lack of fluorescence.
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Lymph Node Single-Cell Isolation

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Mice from each experimental group were killed 21 days after induction and axillary, brachial and inguinal lymph nodes pooled using two mice per sample. Mice were killed by cervical dislocation and were not perfused. Lymph nodes were homogenized and filtered through cell separation columns (Miltenyi Biotec, Auburn, CA, USA) to generate single cell suspensions. Erythrocytes were removed by osmotic shock. Total cell numbers were assessed with trypan blue dye exclusion, and cell viability was typically over 95%. Lymphoid cells were labeled with anti-CD4-FITC and anti-TcRβ-PE monoclonal antibodies/mAb (both from eBioscience, San Diego, CA, USA) and assessed by two color flow cytometry using a FACSCaliber flow cytometer with BD CellQuest software (version 3.3), both from BD Biosciences (Missisauga, ON, Canada). For all experiments, lymphoid cells were cultured at 37°C/5% CO2/95% humidity in RPMI-1640 medium (Invitrogen, Burlington, ON, Canada) supplemented with 5% heat-inactivated fetal calf serum, 100 U/ml penicillin, 100 µg/ml streptomycin, 2 mM L-glutamine and 5 mM HEPES (all from Sigma-Aldrich).
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5

Purification of Astrocytes from Mixed Glia

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Mix Glia was prepared as above, and incubated with 20ug/ml biotin anti-IB4 (Vector Labs) for 20 min at RT, washed and incubated with Streptavidin – conjugated magnetic beads (Miltenyi Biotec) for 15 min at 4C. Cells were washed, and cleared of IB4+ cells (microglial and endothelial cells)43 using cell separation Columns (Miltenyi Biotec). Cells were then cultured until confluent (day 7–10), the astrocyte monolayer was separated using the mild trypsinization procedure, separated into single cells suspension with Accutase (Invitrogen) and plated. Cells were >98% astrocytes, as determined by staining with GFAP or GLAST, with less than 2% contamination of CD11b+ microglia cells (data not shown)).
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