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6 protocols using polyvinylidene difluoride membranes

1

Western Blot Analysis of B7-H4 in Mouse Tumor Tissues

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Mouse tumor tissues were lysed using a lysis buffer (Beyotime Institute of Biotechnology, Haimen, China) and quantified using a bicinchoninic acid protein assay. Aliquots containing 20 µg protein were dissolved in Laemmli buffer and incubated at 95°C for 10 min. Proteins were separated on a 12% Tris-glycine SDS-PAGE (Beyotime Institute of Biotechnology), transferred onto polyvinylidene difluoride membranes (BD Pharmingen, San Diego, CA, USA) and incubated with 5% non-fat dry milk in Tris-buffered saline/0.2% Tween-20 (TBST) for 2 h at room temperature. The membranes were then incubated with anti-B7-H4 antibody (1:1,000 dilution; cat. no. ab108336; Abcam, Cambridge, UK) at 4°C overnight. Membranes were then washed three times with 1X TBST followed by incubation with horseradish peroxidase-conjugated goat anti-rabbit IgG secondary antibody (1:5,000; dilution; cat. no. ZB-2301; BIOSS, Beijing, China) for 1 h at room temperature. Membranes were washed five times in 1X TBST and proteins were visualized using an enhanced chemiluminescence kit (Roche Diagnostics, Basel, Switzerland). GAPDH was detected with mouse anti-GAPDH antibody (1:1,000 dilution; cat. no. AB-P-R 001; OriGene Technologies, Inc., Beijing, China) as an internal control.
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2

Western Blot Analysis of Extracellular Vesicle Markers

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Extracted protein was separated on 6% or 10% sodium dodecyl sulfate (SDS)-polyacrylamide gel electrophoresis (PAGE) gels and transferred onto polyvinylidene difluoride membranes (BD Biosciences). Antibodies to BCL6 (1:250 overnight incubation at 4 ℃; CST), TSG101, CD63, ALIX, HSP70 and APOB (1:1000 overnight incubation at 4 ℃; Proteintech) were used with the same secondary antibody horseradish peroxidase (HRP)-labeled goat-anti-rabbit (1:5000; 1 h incubation at room temperature; Proteintech), while β-actin (1:1000 overnight incubation at 4 ℃; Proteintech) was used with the secondary antibody HRP-labeled goat-anti-mouse (1:5000; 1 h incubation at room temperature; Proteintech). Blots were detected by chemiluminescence using the ChemiDoc XRS Imaging System (Bio-Rad).
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3

Quantification of STAT6 and p-STAT6 Proteins

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Total protein was collected with Total Protein Extraction Kit (KeyGen Biotech. Co. Ltd., Nanjing, China). Proteins (30 mg) were separated on a 10% sodium dodecyl sulfate-polyacrylamide gel, and transferred electrophoretically onto polyvinylidene difluoride membranes (BD Biosciences). The membranes were blocked in 5% skimmed milk for 1 h, and then incubated for 2 h with rabbit anti-STAT6 (1:1,000; Abcam, Cambridge, MA, USA), rabbit anti-phosphorylated (p)-STAT6 (1:1,000; Cell Signaling Technology, Inc., Danvers, MA, USA) or rabbit anti-GAPDH (1:1,000; Bioworld, Technology, Inc., St. Louis Park, MN, USA), which was used as loading control. Following incubation with goat anti-rabbit secondary antibody (Bioworld, Technology, Inc.), the signals derived from the antibody-antigen binding reaction were detected by enhanced chemiluminescence (BD Biosciences).
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4

Protein Immunoblotting from Clinical Samples

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Protein preparation from clinical specimens and transfected or untransfected cells was conducted as reported in ref. [17 (link)]. For immunoblotting, total protein (50 µg) was resolved on denaturing gels with 4–12% SDS-polyacrylamide and transferred to polyvinylidene difluoride membranes (BD Biosciences) by wet transfer. The membranes were probed with primary antibodies, including anti-Ki-67 (ab92742; dilution 1:5,000), anti-B cell lymphoma 2 (anti-Bcl-2, ab117115; dilution 1:1,000), anti-matrix metallopeptidase 9 (anti-MMP9, ab76003; dilution 1:3,000), anti-LASP1 (ab117806; dilution 1:5,000), and anti-GAPDH (ab186930; dilution 1:1,000), and IgG secondary antibodies labeled by horseradish peroxidase (ab205719 and ab97051, all from Abcam; dilution 1:10,000 and 1:10,000). Signal detection was done by the Enhanced Chemiluminescence (Cat. 34578; Thermo Fisher Scientific) before analyzing the band densitometry.
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5

Glioblastoma Cell Line Establishment and Characterization

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The glioblastoma cell lines 8401, 8901, U87, GBM-22 TMZ resistence cell line (G2T), were purchased from Bioresource Collection and Research Center (BCRC). RG2, GL261, were purchased from the American Type Culture Collection (ATCC). 131TXM and 1XM, two glioblastoma stem cell lines, were generous gifts from Dr. Dueng-Yuan Hueng. Roswell Park Memorial Institute (RPMI) 1640 medium, Dulbecco modified Eagle's medium (DMEM), FBS, penicillin, streptomycin, and trypsin–EDTA were purchased from Gibco. Dimethyl sulfoxide, MTT, and Lipofectamine 2000 were purchased from Invitrogen (Carlsbad, CA, USA). Caspase-3 antibody, anti-cleavage caspase-3 antibody, anti-cleavage caspase-7 antibody, anti-cleavage caspase-9 antibody, DDIT3 antibody, NAG-1 antibody, and monoclonal β-actin antibodies were purchased from Sigma–Aldrich Co. (St. Louis, MO, USA). PERK antibody and GRP78 antibody were purchased from Genetex. Fluorescein is thiocyanate, Annexin V Apoptosis Detection Kit I, RNA isolation kit, and Polyvinylidene difluoride membranes were purchased from BD Pharmingen.
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6

Western Blot Analysis of SOS Signaling

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HeLa cells transfected with plasmids encoding the SOS molecules were incubated overnight in MEM, supplemented with 1% BSA. The cells were washed twice with Hank’s balanced salt solution (HBSS) and harvested in SDS solubilisation buffer. The proteins in the cell lysates were separated according to their molecular sizes on 10% or 8% polyacrylamide gel, and transferred to polyvinylidene difluoride membranes (BD Biosciences). The membranes were incubated in 5% skim milk with an anti-SOS1 antibody (#5890; Cell Signaling), anti-ERK antibody (#4696; Cell Signaling), or anti-pERK antibody (#9106; Cell Signaling). After the membranes were washed tree times with PBS, the membranes were incubated with a secondary antibody conjugated with alkaline phosphatase (Vectastain ABC-AP Kit; Vector Laboratories) or with horseradish peroxidase (#7074, #7076; Cell signalling). Antibody bindings were visualized with BCIP/NBT Color Development Substrate (Promega) or with ECL Prime Western Blotting Detection Reagent Kit (GE Healthcare).
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