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7 protocols using low molecular weight heparin

1

PKR Autophosphorylation Assay Protocol

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PKR autophosphorylation was monitored by incorporation of 32P from [γ-32P]ATP (Perkin-Elmer). Low molecular weight heparin (4–6 kDa) was obtained from Sigma-Aldrich. Samples contained a fixed concentration of PKR and a variable concentration of activator. The assay was performed in AU75 buffer plus 5 mM MgCl2 at 32 °C. Samples were prepared on ice then incubated at 32 °C for 10 minutes prior to initiation of phosphorylation by addition of ATP to a final concentration of 400 µM and 0.25 µCi/µL [γ-32P]ATP. Reactions were quenched after 20 min incubation with sample loading buffer and resolved by SDS-PAGE. The gels were dried and exposed to a phosphor screen followed by quantitation on a Typhoon phosphorimager using ImageQuant TL Software (GE Healthcare).
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2

Reagents and Materials for Cell Culture

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L-glutamine, HEPES buffer, trypsin-EDTA, G418 sulfate, Low molecular weight heparin (~3000Da) and 100 x stock of penicillin(10,000 Units/mL)/streptomycin (10mg/mL) were purchased from Sigma (St. Louis, MO). Cell culture media components, including FBS, horse serum, DMEM, and AMEM were purchased from Thermo Scientific (Rockford, IL). CDM-HD serum replacement was purchased from Fiber Cell Systems (Frederick, MD). Recombinant hIL-12 was purchased from Peprotech (Rocky Hill, NJ). Bicinchoninic acid (BCA) protein assay kits were purchased from Thermo Scientific (Rockford, IL). All antibodies used for Western were purchased from eBiosciences (San Diego, CA). Heparin Sepharose columns were purchased from GE Healthcare Bio-Sciences (Piscataway, NJ).
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3

Interference Assessment for Lipid and Protein Assays

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In order to assess possible interference of different substances with the total lipid and protein assays, 0μg to 20μg of tryptophan, leucine, serine, bovine serum albumin, menhaden fish oil, low molecular weight heparin, glucose (all from Sigma-Aldrich), as well as human U937 cell-derived total DNA and RNA were subjected to lipid and protein determination as described above (S2 Fig.).
Some interference by glucose was detected on the SPV assay. In the Micro BCA protein assay, both tryptophan and glucose resulted in strong colorimetric reactions. Data of n = 3 independent experiments are shown. The scale of the Y axis the amino acid interference on Micro BCA is different of the rest.
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4

Aggregation of Tau Protein In Vitro

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Tau protein was diluted to 40 µM in 100 mM sodium acetate pH 7 with 2 mM DTT and heated for 10 min at 55 °C. Low molecular weight heparin (Sigma) was added to 40 µM. The mixture was distributed to a 96-well plate and shaken in a tabletop Thermomixer (Eppendorf) at 37 °C and 1,000 rpm for 7 days. Insoluble Tau was pelleted by ultracentrifugation at 100,000 g for 30 min at 4 °C. The pellet was washed twice, with resuspension by vigorous pipetting in 100 mM sodium acetate pH 7. Aggregate formation was monitored by thioflavin assay and electron microscopy.
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5

RANTES-Induced Endothelial Cell Spreading

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After a 24 h serum deprivation, 20 × 103EPC per well were seeded on a fibronectin (100 μg/mL, BD Biosciences Pharmingen, Le Pont de Claix, France) pre-coated 8-well Labtek and incubated for 2 h at 37 °C with 3 nM RANTES to assess their spreading. In a parallel experiment, EPC were pre-incubated for 2 h at 37 °C with anti-CCR5, anti-CD44, or anti- SDC-4 antibodies or their isotypes (5 µg/mL). Alternatively, cells were preincubated with beta-D-xyloside (1 mM) for 72 h, or RANTES was pre-incubated with low molecular weight heparin (10 µg/mL, Sigma-Aldrich) for 2 h, as previously described12 (link). Cells were permeabilized in 0.05% Triton X-100 (Sigma-Aldrich), fixed with PFA (1%) then stained with AlexaFluor 568 phalloidin (Molecular Probes, Invitrogen) and filamentous actin was observed with a fluorescence microscope (Zeiss, AXIOPHOT, N°/MicMac, France S.A). Ten fields of stained cells were photographed for each treatment. Cell areas expressed in square inches were evaluated on 30 cells by treatment with the Scion Imager software (Scion Image Software and National Institutes of Health, Release Beta 3b Software).
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6

Multivalent Binding Assay for Amyloid Detection

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Bioactivity of the Fcp5, peptide p5, and Fc2a control was assessed using a EuLISA. The wells of a 96-well polystyrene microplate (Corning, Corning, NY, USA) were coated either with poly-l-lysine (Sigma-Aldrich) followed by low molecular weight heparin (Sigma-Aldrich), amyloid-like fibrils (0.83 µM), or monomeric forms of rVλ6Wil, Aβ(1–40) or human IAPP(Ile26Pro). Wells coated with fibrils or monomeric proteins were incubated overnight at 37 or 4°C, respectively. The wells were then treated with 200 µL of blocking buffer (PBS containing 1% bovine serum albumin; BSA) for 1 h at room temperature before washing with PBS and addition of the appropriate concentration of Fcp5, biotinylated-p5, or Fc2a in PBS with 1% (w/v) BSA and 0.05% (v/v) tween 20. Following a wash step, the bound Fcp5 and Fc2a were detected by addition of biotinylated goat anti-mouse IgG (Sigma-Aldrich). After washing with PBS/tween, wells were incubated with 100 µL of europium–streptavidin (Perkin Elmer, Waltham, MA, USA) and washed, followed by addition of 100 µL enhancement solution (Perkin Elmer) before measurement of time-resolved fluorescence emission using a Wallac Victor 3 plate reader (Perkin Elmer).
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7

Coagulation Assay Protocol for Anticoagulant Drugs

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Chemicals. Reagents of TT, PT and APTT, CaCl2 and coagulation control plasma were produced in TECO (Germany). Tris–HCl was purchased from Amresco (USA). Reference anticoagulant drug (heparin, HEP; low molecular weight heparin, LMWH) and DMSO were produced in Sigma-Aldrich (USA).
The measurements were taken using the MC-4000 Optic coagulometer (Germany). Prior to the detection, coagulation control plasma were pre-incubated with the examined compounds (15 min, 37 °C) at the final concentrations of 200 μM.
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