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3 protocols using taqman universal pcr master mix and probes

1

Gene Expression Analysis of Metabolic Pathways

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Total RNA was extracted from tissue samples using the RNeasy minikit (Qiagen, Valencia, CA, USA) and homogenized using a Polytron (Kynematica Polytron, Westbury, USA). Total RNA (0.5 µg) was retro-transcribed (RT) using TaqMan reverse transcription reagents from Applied Biosystems (Branchburg, USA) plus random hexamers. Real-time PCR was performed using the ROCHE sequence detection system with the TaqMan universal PCR master mix and probes (Applied Biosystems) for the mouse Slc27a1/FATP1, Oxct1 and Pdk4 genes, using Rn18s as the endogenous control to normalize the crossing point (CP). For the Hmgcs2 gene real-time PCR was performed using the ABI PRISM 7500 sequence detection system (Applied Biosystems) with the GoTaq qPCR master mix (Promega) and SyberGreen labelling and using the Actb gene as the endogenous control to normalize the threshold cycle (CT).
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2

VIP-Induced Osteoclastogenesis Regulation

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VIP was purchased from Nanjing Peptide Biotechnology Inc. (Nanjing, China). Fetal bovine serum (FBS), a modification of Minimum Essential Medium (a-MEM), and L-glutamine were supplied by Invitrogen (Carlsbad, USA). Oligonucleotide primers were ordered from Sangon Biotech (Shanghai, China). TaqMan Universal PCR Master Mix and probes were obtained from Applied Biosystems (Foster City, CA). anti-RANKL, anti-RANK, anti-OPG, anti-NF-κB, anti-interleukin 6 (IL-6), anti-ERK, anti-carbonic anhydrase II (CAII), anti-glyceraldehyde-3-phosphate dehydrogenase (GAPDH) primary, and anti-IgG-horseradish peroxidase secondary antibodies were purchased from Bioss Biotechnology, Inc. (Beijing, China).
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3

Aorta, Heart, Kidney, Adrenal RNA Profiling

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Total RNA from aorta, heart, kidney and adrenal gland was extracted using RNeasy kit (QIAGEN) following the manufacturer’s instructions. The concentration of RNA was measured by nanodrop (Thermo Scientific). 0.5μg of each sample was applied reverse transcription with reagents obtained from Applied Biosystem. Taqman universal PCR Master Mix and probes (Applied Biosystems) for 18s rRNA, COXs, and core clock genes, Bmal1, Clock, Npas2, Reverbα, Per1, Per2, Cry1, Cry2, were used for real-time PCR.
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